| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Sphingobium sp. HT1-2 | GFF3226 | | Serine recombinase, PinQ/PinR-type | cofit | 100 | 100 |
| o | Ralstonia solanacearum IBSBF1503 | RALBFv3_RS12085 | | recombinase family protein | insig. | 73 | 81 |
| | Erwinia amylovora T8 | OLJFJH_00050 | | resolvase | no data | 64 | 81 |
| o | Erwinia amylovora T8 | OLJFJH_00195 | | resolvase | no data | 64 | 81 |
| o | Erwinia tracheiphila SCR3 | LU632_RS07385 | | recombinase family protein | insig. | 65 | 81 |
| o | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_24180 | | resolvase | cofit | 65 | 81 |
| o | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20345 | | recombinase family protein | cofit | 63 | 81 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20565 | | recombinase family protein | cofit | 63 | 81 |
| | Sphingobium sp. HT1-2 | GFF1176 | | Serine recombinase, PinQ/PinR-type | cofit | 66 | 81 |
| o | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_02167 | | Tn3 family transposase ISYps3 | cofit | 58 | 82 |
| o | Escherichia coli BL21 | ECD_01504 | | Qin prophage; putative site-specific recombinase | no data | 58 | 82 |
| o | Escherichia coli BW25113 | b1374 | pinR | Rac prophage; predicted site-specific recombinase (NCBI) | no data | 58 | 82 |
| | Escherichia coli BW25113 | b1545 | pinQ | Qin prophage; predicted site-specific recombinase (NCBI) | insig. | 58 | 82 |
| | Escherichia coli BL21 | ECD_01345 | | Rac prophage; putative site-specific recombinase | no data | 58 | 82 |
| o | Escherichia coli ECOR27 | NOLOHH_18610 | pinR | Serine recombinase PinR | cofit | 58 | 82 |
| | Pseudomonas sp. SVBP6 | COO64_RS22175 | | recombinase family protein | insig. | 62 | 81 |
| o | Ralstonia solanacearum PSI07 | RPSI07_RS15555 | | recombinase family protein | insig. | 60 | 81 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS26325 | | recombinase family protein | insig. | 49 | 78 |
| | Escherichia coli ECRC100 | OKFHMN_11730 | spoIVCA | resolvase | insig. | 50 | 78 |
| | Escherichia coli ECRC101 | MCAODC_02245 | spoIVCA | resolvase | insig. | 50 | 78 |
| | Escherichia coli ECRC102 | NIAGMN_09580 | spoIVCA | resolvase | insig. | 50 | 78 |
| | Escherichia coli ECRC99 | KEDOAH_16415 | spoIVCA | resolvase | no data | 50 | 78 |
| | Methylophilus sp. DMC18 | GFF745 | | Tn3 family transposase ISYps3 | insig. | 48 | 80 |
| | Escherichia coli ECOR27 | NOLOHH_15375 | | recombinase family protein | insig. | 48 | 81 |
| | Ralstonia solanacearum UW163 | UW163_RS01540 | | recombinase family protein | insig. | 47 | 78 |
| | Escherichia coli ECOR38 | HEPCGN_26960 | | Putative DNA-invertase | insig. | 65 | 52 |
| o | Pseudomonas orientalis W4I3 | QF045_RS23030 | | recombinase family protein | insig. | 46 | 81 |
| o | Enterobacter sp. TBS_079 | MPMX20_04027 | | Serine recombinase PinR | insig. | 47 | 81 |
| | Vibrio cholerae E7946 ATCC 55056 | CSW01_18145 | | resolvase | cofit | 41 | 80 |
| | Shewanella oneidensis MR-1 | SOA0086 | | site-specific recombinase, resolvase family (NCBI ptt file) | insig. | 36 | 81 |
| | Sinorhizobium meliloti 1021 | SMc02287 | | DNA-invertase | insig. | 37 | 80 |
| | Escherichia coli BW25113 | b1158 | pin | e14 prophage; site-specific DNA recombinase (NCBI) | sig. | 39 | 66 |
| | Kangiella aquimarina DSM 16071 | B158DRAFT_0960 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 36 | 78 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1543 | | DNA-invertase | insig. | 38 | 67 |
| | Azospirillum sp. SherDot2 | MPMX19_01561 | | DNA-invertase hin | insig. | 36 | 79 |
| | Escherichia coli ECRC101 | MCAODC_00110 | pinE | site-specific DNA recombinase | insig. | 39 | 66 |
| | Escherichia coli ECRC102 | NIAGMN_07460 | pinE | site-specific DNA recombinase | insig. | 39 | 66 |
| | Escherichia coli ECOR38 | HEPCGN_04245 | | DNA-invertase | insig. | 36 | 79 |
| | Methanococcus maripaludis S2 | MMP_RS03990 | | recombinase family protein | insig. | 40 | 62 |
| | Escherichia coli ECRC100 | OKFHMN_09410 | pinE | site-specific DNA recombinase | cofit | 38 | 66 |
| | Escherichia coli ECRC98 | JDDGAC_13045 | pinE | site-specific DNA recombinase | insig. | 38 | 66 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4084 | | Resolvase domain (RefSeq) | insig. | 35 | 79 |
| | Azospirillum sp. SherDot2 | MPMX19_06437 | | DNA-invertase hin | insig. | 43 | 65 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3683 | | Resolvase domain (RefSeq) | insig. | 39 | 66 |
| | Escherichia fergusonii Becca | EFB2_03222 | | DNA-invertase hin | insig. | 39 | 67 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_19155 | | DNA-invertase | no data | 35 | 79 |
| | Sphingobium sp. HT1-2 | GFF5199 | | hypothetical protein | cofit | 35 | 79 |
| | Azospirillum sp. SherDot2 | MPMX19_01313 | | DNA-invertase hin | insig. | 35 | 79 |
| | Escherichia coli ECOR38 | HEPCGN_26710 | spoIVCA | DNA-invertase | insig. | 38 | 67 |
| | Escherichia coli ECRC98 | JDDGAC_09160 | spoIVCA | DNA-invertase | strong | 39 | 66 |
| | Escherichia coli ECRC101 | MCAODC_20820 | spoIVCA | DNA-invertase | insig. | 37 | 67 |
| | Klebsiella michiganensis M5al | BWI76_RS12375 | | DNA-invertase hin | sig. | 38 | 65 |
| | Sphingobium sp. HT1-2 | GFF4499 | | hypothetical protein | cofit | 35 | 79 |
| | Escherichia coli ECOR38 | HEPCGN_24370 | | DNA invertase | insig. | 36 | 79 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS16710 | | recombinase family protein | insig. | 37 | 74 |
| | Dechlorosoma suillum PS | Dsui_2500 | | site-specific recombinase, DNA invertase Pin | cofit | 36 | 79 |
| | Shewanella loihica PV-4 | Shew_0991 | | resolvase domain-containing protein (RefSeq) | no data | 38 | 66 |
| | Shewanella loihica PV-4 | Shew_3862 | | resolvase domain-containing protein (RefSeq) | insig. | 39 | 80 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04373 | | Transposon Tn3 resolvase | insig. | 31 | 80 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_00030 | | Transposon Tn1331 resolvase | no data | 31 | 80 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_02085 | | Transposon Tn1331 resolvase | no data | 31 | 80 |
| | Pseudomonas stutzeri RCH2 | Psest_4043 | | Site-specific recombinases, DNA invertase Pin homologs | insig. | 40 | 66 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_2668 | | Helix-turn-helix, Fis-type | insig. | 37 | 79 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_2668 | | Helix-turn-helix, Fis-type | insig. | 37 | 79 |
| | Pseudomonas putida KT2440 | PP_5490 | | site-specific DNA recombinase | insig. | 34 | 80 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.3230.1 | | Phage DNA invertase | insig. | 35 | 77 |
| | Synechocystis sp000284455 PCC 6803 | SGL_RS01270 | | recombinase family protein | insig. | 32 | 78 |
| | Agrobacterium fabrum C58 | Atu6046 | | DNA invertase | insig. | 37 | 64 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS20365 | | recombinase family protein | cofit | 36 | 65 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4026 | | Resolvase domain (RefSeq) | insig. | 39 | 65 |
| | Azospirillum brasilense Sp245 | AZOBR_RS30300 | | resolvase | insig. | 38 | 68 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS15985 | | recombinase family protein | cofit | 36 | 67 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4105 | | Resolvase domain (RefSeq) | insig. | 38 | 65 |
| | Erwinia tracheiphila SCR3 | LU632_RS04400 | | recombinase family protein | insig. | 35 | 79 |
| | Dickeya dianthicola 67-19 | HGI48_RS12185 | | recombinase family protein | insig. | 39 | 78 |
| | Methanococcus maripaludis JJ | MMJJ_RS02615 | | recombinase family protein | no data | 35 | 62 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3853 | | Resolvase domain (RefSeq) | insig. | 39 | 62 |
| | Sphingobium sp. HT1-2 | GFF5292 | | Phage DNA invertase | cofit | 33 | 78 |
| | Shewanella sp. ANA-3 | Shewana3_2637 | | resolvase domain-containing protein (RefSeq) | insig. | 33 | 80 |
| | Variovorax sp. SCN45 | GFF7081 | | Mobile element protein | no data | 37 | 65 |
| | Escherichia coli ECRC62 | BNILDI_21055 | | DNA-invertase | cofit | 35 | 76 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_25760 | | Recombinase family protein | cofit | 36 | 65 |
| | Erwinia tracheiphila SCR3 | LU632_RS10670 | | recombinase family protein | sig. | 36 | 65 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS12400 | | DUF1492 domain-containing protein | insig. | 38 | 62 |
| | Parabacteroides merdae CL09T00C40 | HMPREF1078_RS15975 | | master DNA invertase Mpi family serine-type recombinase | insig. | 32 | 78 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS00040 | | recombinase | insig. | 37 | 83 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3680 | | Resolvase domain (RefSeq) | no data | 35 | 80 |
| | Dinoroseobacter shibae DFL-12 | Dshi_3876 | | Resolvase domain (RefSeq) | no data | 35 | 80 |
| | Dinoroseobacter shibae DFL-12 | Dshi_4081 | | Resolvase domain (RefSeq) | no data | 35 | 80 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS33400 | | helix-turn-helix domain-containing protein | no data | 29 | 82 |
| | Dechlorosoma suillum PS | Dsui_0771 | | site-specific recombinase, DNA invertase Pin | insig. | 34 | 79 |
| | Shewanella oneidensis MR-1 | SOA0019 | | ISSod9, DNA-invertase (NCBI ptt file) | no data | 36 | 65 |
| | Shewanella oneidensis MR-1 | SOA0170 | | ISSod9, DNA-invertase (NCBI ptt file) | no data | 36 | 65 |
| | Rhodospirillum rubrum S1H | Rru_B0010 | | Resolvase (NCBI) | insig. | 36 | 65 |
| | Sphingobium sp. HT1-2 | GFF5326 | | Phage integrase, site-specific serine recombinase | cofit | 38 | 65 |
| | Erwinia tracheiphila SCR3 | LU632_RS25210 | | recombinase family protein | insig. | 37 | 66 |
| | Dickeya dianthicola ME23 | DZA65_RS12635 | | recombinase family protein | insig. | 39 | 78 |
| | Erwinia tracheiphila SCR3 | LU632_RS10615 | | recombinase family protein | insig. | 34 | 79 |
| | Phocaeicola dorei CL03T12C01 | ABI39_RS05885 | | master DNA invertase Mpi family serine-type recombinase | insig. | 35 | 78 |
| | Klebsiella pneumoniae MKP103 | KDGMDA_19850 | | DNA-invertase | sig. | 42 | 46 |