| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Sphingobium sp. HT1-2 | GFF2020 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | cofit | 100 | 100 |
| | Sphingomonas koreensis DSMZ 15582 | Ga0059261_3858 | | DNA ligase D | insig. | 78 | 98 |
| | Sphingobium sp. HT1-2 | GFF5134 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | cofit | 74 | 98 |
| | Sinorhizobium meliloti 1021 | SMc03959 | | hypothetical protein | insig. | 55 | 97 |
| | Rhizobium sp. OAE497 | ABIE40_RS26435 | | DNA ligase D | insig. | 57 | 80 |
| | Agrobacterium fabrum C58 | Atu4632 | | ATP-dependent DNA ligase | insig. | 53 | 88 |
| | Rhizobium sp. OAE497 | ABIE40_RS28460 | | DNA ligase D | insig. | 56 | 85 |
| | Sinorhizobium meliloti 1021 | SMa0414 | | hypothetical protein | insig. | 58 | 77 |
| | Rhizobium sp. OAE497 | ABIE40_RS29525 | | DNA ligase D | insig. | 55 | 79 |
| | Xanthobacter sp. DMC5 | GFF242 | | Multifunctional non-homologous end joining protein LigD | insig. | 52 | 86 |
| | Agrobacterium fabrum C58 | Atu5055 | | ATP-dependent DNA ligase | insig. | 55 | 78 |
| | Rhodopseudomonas palustris CGA009 | TX73_018915 | | DNA ligase D | insig. | 54 | 90 |
| | Brevundimonas sp. GW460-12-10-14-LB2 | A4249_RS10580 | | DNA ligase D | insig. | 54 | 82 |
| | Bosea sp. OAE506 | ABIE41_RS04575 | | DNA ligase D | insig. | 55 | 76 |
| | Bosea sp. OAE506 | ABIE41_RS06605 | | DNA ligase D | insig. | 56 | 78 |
| | Sinorhizobium meliloti 1021 | SM_b20685 | | hypothetical protein | insig. | 54 | 76 |
| | Ralstonia sp. UNC404CL21Col | ABZR87_RS08115 | | DNA ligase D | insig. | 48 | 97 |
| | Ralstonia solanacearum PSI07 | RPSI07_RS21105 | | DNA ligase D | insig. | 52 | 75 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS15285 | | DNA ligase D | insig. | 45 | 97 |
| | Paraburkholderia graminis OAS925 | ABIE53_002080 | | bifunctional non-homologous end joining protein LigD | insig. | 43 | 96 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_03237 | | Multifunctional non-homologous end joining protein LigD | cofit | 51 | 76 |
| | Hydrogenophaga sp. GW460-11-11-14-LB1 | GFF111 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | insig. | 55 | 70 |
| | Paraburkholderia sabiae LMG 24235 | QEN71_RS22145 | | DNA ligase D | insig. | 43 | 95 |
| | Pseudomonas simiae WCS417 | PS417_13125 | | ATP-dependent DNA ligase | insig. | 51 | 76 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS11360 | | DNA ligase | insig. | 58 | 64 |
| | Variovorax sp. SCN45 | GFF6242 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | insig. | 53 | 75 |
| | Pseudomonas orientalis W4I3 | QF045_RS16850 | | DNA ligase D | insig. | 52 | 74 |
| | Pseudomonas aeruginosa PA14 | IKLFDK_10445 | | DNA ligase D | sig. | 51 | 75 |
| | Pseudomonas aeruginosa MRSN321 | DY961_RS16935 | ligD;go_process=double-strand | DNA ligase D | insig. | 51 | 75 |
| | Pseudomonas aeruginosa PUPa3 | DQ20_RS39205 | ligD;go_process=double-strand | DNA ligase D | insig. | 51 | 75 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_3245 | | ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module | insig. | 54 | 68 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_3245 | | ATP-dependent DNA ligase LigD phosphoesterase module / ATP-dependent DNA ligase LigD polymerase module | insig. | 54 | 68 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS14185 | | DNA ligase D | insig. | 52 | 73 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS14185 | | DNA ligase D | insig. | 52 | 73 |
| | Pedobacter sp. GW460-11-11-14-LB5 | CA265_RS06915 | | DNA ligase D | insig. | 49 | 78 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS09215 | | ATP-dependent DNA ligase | insig. | 46 | 88 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_00864 | | ATP-dependent DNA ligase LigD phosphoesterase module/ATP-dependent DNA ligase LigD polymerase module | insig. | 43 | 96 |
| | Pseudomonas sp. S08-1 | OH686_01425 | | DNA ligase D | cofit | 51 | 72 |
| | Dyella japonica UNC79MFTsu3.2 | ABZR86_RS02935 | | DNA ligase D | insig. | 56 | 67 |
| | Pseudomonas stutzeri RCH2 | Psest_2179 | | DNA ligase D | insig. | 49 | 75 |
| | Pseudomonas fluorescens FW300-N2C3 | AO356_26950 | | ATP-dependent DNA ligase | insig. | 51 | 75 |
| | Pseudomonas putida KT2440 | PP_3260 | | DNA ligase D | insig. | 47 | 88 |
| | Cupriavidus basilensis FW507-4G11 | RR42_RS37085 | | ATP-dependent DNA ligase | insig. | 52 | 67 |
| | Pseudomonas sp. BP01 | JOY50_RS26485 | ligD | DNA ligase D | insig. | 50 | 76 |
| | Pseudomonas fluorescens FW300-N2E2 | Pf6N2E2_1216 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | insig. | 51 | 74 |
| | Pseudomonas sp. RS175 | PFR28_02106 | | Multifunctional non-homologous end joining protein LigD | insig. | 50 | 73 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_4314 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | insig. | 47 | 83 |
| | Pseudomonas sp. DMC3 | GFF1659 | | Multifunctional non-homologous end joining protein LigD | cofit | 49 | 74 |
| | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_01037 | | DNA ligase D, 3'-phosphoesterase domain-containing protein | insig. | 54 | 63 |
| | Pseudomonas sp. SVBP6 | COO64_RS24640 | ligD | DNA ligase D | insig. | 47 | 76 |
| | Bacteroides ovatus ATCC 8483 | BACOVA_04131 | | DNA ligase D, 3'-phosphoesterase domain protein | strong | 49 | 67 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.2247.1 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | insig. | 51 | 70 |
| | Lysobacter sp. OAE881 | ABIE51_RS12760 | | DNA ligase D | insig. | 51 | 70 |
| | Xanthomonas campestris pv. campestris strain 8004 | Xcc-8004.140.1 | | ATP-dependent DNA ligase (EC 6.5.1.1) clustered with Ku protein, LigD | insig. | 50 | 63 |
| | Mycobacterium tuberculosis H37Rv | Rv0938 | | ATP dependent DNA ligase LigD (ATP dependent polydeoxyribonucleotide synthase) (thermostable DNA ligase) (ATP dependent polynucleotide ligase) (sealase) (DNA repair enzyme) (DNA joinase) | insig. | 36 | 98 |