Homologs of CSW01_02100 from Vibrio cholerae E7946 ATCC 55056

RNase E specificity factor CsrD
SEED: MSHA biogenesis protein MshH

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Vibrio cholerae E7946 ATCC 55056 CSW01_02100 RNase E specificity factor CsrD cofit 100 100
o Serratia liquefaciens MT49 IAI46_22725 RNase E specificity factor CsrD insig. 36 93
o Dickeya dianthicola ME23 DZA65_RS01405 RNase E specificity factor CsrD sig. 36 93
o Dickeya dianthicola 67-19 HGI48_RS01345 RNase E specificity factor CsrD cofit 36 93
o Rahnella sp. WP5 EX31_RS12230 RNase E specificity factor CsrD insig. 33 98
o Enterobacter asburiae PDN3 EX28DRAFT_3302 diguanylate cyclase (GGDEF) domain cofit 34 97
o Escherichia coli ECOR38 HEPCGN_16585 csrD RNase E specificity factor CsrD cofit 34 97
o Dickeya dadantii 3937 DDA3937_RS01425 RNase E specificity factor CsrD cofit 35 93
o Escherichia coli ECOR27 NOLOHH_09505 csrD RNase E specificity factor CsrD cofit 33 97
o Escherichia coli ECRC100 OKFHMN_17720 csrD RNase E specificity factor CsrD cofit 33 97
o Escherichia coli ECRC101 MCAODC_08240 csrD RNase E specificity factor CsrD cofit 33 97
o Escherichia coli ECRC102 NIAGMN_15480 csrD RNase E specificity factor CsrD insig. 33 97
o Escherichia coli ECRC98 JDDGAC_21345 csrD RNase E specificity factor CsrD cofit 33 97
o Escherichia coli ECRC99 KEDOAH_10430 csrD RNase E specificity factor CsrD no data 33 97
o Escherichia coli Nissle 1917 ECOLIN_RS18635 RNase E specificity factor CsrD cofit 33 97
o Escherichia coli ECRC62 BNILDI_02015 csrD RNase E specificity factor CsrD cofit 33 97
o Escherichia coli BL21 ECD_03111 targeting factor for csrBC sRNA degradation cofit 34 97
o Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00453 RNase E specificity factor CsrD insig. 34 97
o Escherichia coli BW25113 b3252 yhdA conserved inner membrane protein (NCBI) sig. 34 97
o Escherichia fergusonii Becca EFB2_00579 RNase E specificity factor CsrD insig. 33 97
o Enterobacter sp. TBS_079 MPMX20_04158 RNase E specificity factor CsrD strong 33 97
o Pectobacterium carotovorum WPP14 HER17_RS20175 RNase E specificity factor CsrD insig. 33 93
o Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2133 RNase E specificity factor CsrD strong 34 94
o Klebsiella michiganensis M5al BWI76_RS25505 RNase E specificity factor CsrD strong 32 97
o Erwinia tracheiphila SCR3 LU632_RS21455 csrD RNase E specificity factor CsrD insig. 31 98
o Erwinia amylovora T8 OLJFJH_06905 RNase E specificity factor CsrD strong 31 91
o Pantoea sp. MT58 IAI47_02430 RNase E specificity factor CsrD insig. 32 93
o Shewanella oneidensis MR-1 SO4116 mshH MSHA biogenesis protein MshH (NCBI ptt file) strong 30 93
o Shewanella sp. ANA-3 Shewana3_3668 regulatory protein CsrD (RefSeq) sig. 30 94
o Shewanella amazonensis SB2B Sama_0449 regulatory protein CsrD (RefSeq) sig. 29 95
o Shewanella loihica PV-4 Shew_0384 regulatory protein CsrD (RefSeq) strong 30 93
  Pseudomonas fluorescens FW300-N2E3 AO353_18415 hypothetical protein insig. 27 67
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1802 Membrane bound c-di-GMP receptor LapD insig. 25 65
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3529 Membrane bound c-di-GMP receptor LapD insig. 25 77
  Pseudomonas fluorescens FW300-N2C3 AO356_10580 hypothetical protein cofit 25 65
  Pseudomonas fluorescens FW300-N2E3 AO353_11170 hypothetical protein strong 25 65
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3983 Membrane bound c-di-GMP receptor LapD strong 25 66
  Pseudomonas sp. DMC3 GFF4286 hypothetical protein cofit 25 65
  Pseudomonas sp. S08-1 OH686_20650 Membrane bound c-di-GMP receptor LapD insig. 27 64
  Pseudomonas sp. RS175 PFR28_04783 hypothetical protein strong 25 65
  Pseudomonas sp. SVBP6 COO64_RS26435 lapD cyclic di-GMP receptor LapD cofit 24 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4428 Membrane bound c-di-GMP receptor LapD insig. 25 75
  Pseudomonas fluorescens GW456-L13 PfGW456L13_546 Membrane bound c-di-GMP receptor LapD insig. 25 65
  Shewanella sp. ANA-3 Shewana3_2167 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 64
  Shewanella amazonensis SB2B Sama_1829 putative diguanylate phosphodiesterase (RefSeq) insig. 24 64
  Shewanella oneidensis MR-1 SO2507 GGDEF domain protein (NCBI ptt file) insig. 23 61
  Pseudomonas sp. BP01 JOY50_RS28180 lapD cyclic di-GMP receptor LapD no data 24 65
  Alteromonas macleodii MIT1002 MIT1002_01618 Cyclic di-GMP phosphodiesterase Gmr insig. 24 65
  Marinobacter adhaerens HP15 HP15_3218 diguanylate cyclase/phosphodiesterase insig. 24 64
  Pseudomonas aeruginosa PA14 IKLFDK_06810 Diguanylate cyclase/phosphodiesterase insig. 25 65
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 62
  Pseudomonas putida KT2440 PP_0165 GGDEF domain protein strong 24 65
  Pectobacterium carotovorum WPP14 HER17_RS05880 EAL domain-containing protein cofit 23 65
  Marinobacter adhaerens HP15 HP15_806 response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 24 66
  Acidovorax sp. GW101-3H11 Ac3H11_2106 Membrane bound c-di-GMP receptor LapD insig. 24 62
  Pseudomonas stutzeri RCH2 Psest_1864 diguanylate cyclase (GGDEF) domain insig. 24 65
  Vibrio cholerae E7946 ATCC 55056 CSW01_19490 GGDEF domain-containing protein cofit 23 73
  Pseudomonas aeruginosa PA14 IKLFDK_00505 cyclic di-GMP receptor MorA insig. 25 64
  Methylophilus sp. DMC18 GFF1518 hypothetical protein cofit 24 62
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 26 60
  Marinobacter adhaerens HP15 HP15_4050 sensory box/GGDEF family protein cofit 23 65
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 21 62
  Erwinia amylovora T8 OLJFJH_03300 GGDEF domain-containing protein cofit 24 64
  Shewanella amazonensis SB2B Sama_0378 sensory box protein (RefSeq) sig. 22 62
  Shewanella sp. ANA-3 Shewana3_0429 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 23 62
  Dechlorosoma suillum PS Dsui_1564 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 24 67
  Shewanella loihica PV-4 Shew_2065 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 21 64
  Dickeya dadantii 3937 DDA3937_RS11465 EAL domain-containing protein strong 24 66
  Pantoea sp. MT58 IAI47_03280 EAL domain-containing protein insig. 23 63
  Shewanella loihica PV-4 Shew_0307 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 21 75
  Pseudomonas aeruginosa PA14 IKLFDK_08335 Uncharacterized signaling protein PA1727 insig. 25 62
  Dickeya dianthicola ME23 DZA65_RS11845 EAL domain-containing protein cofit 24 67
  Pseudomonas sp. RS175 PFR28_02059 Oxygen sensor protein DosP insig. 27 62
  Pseudomonas sp. SVBP6 COO64_RS03000 EAL domain-containing protein insig. 24 62
  Pseudomonas fluorescens FW300-N2E3 AO353_17145 diguanylate phosphodiesterase insig. 23 72
  Dechlorosoma suillum PS Dsui_0262 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 25 64
  Pantoea sp. MT58 IAI47_03300 EAL domain-containing protein insig. 24 71
  Acinetobacter radioresistens SK82 MPMX26_00895 hypothetical protein no data 22 63
  Pseudomonas sp. S08-1 OH686_16235 Sensory box/GGDEF family protein insig. 24 62
  Methylophilus sp. DMC18 GFF459 hypothetical protein insig. 24 62
  Pseudomonas syringae pv. syringae B728a Psyr_4265 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 24 64
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4265 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 24 64
  Dickeya dianthicola 67-19 HGI48_RS11510 EAL domain-containing protein cofit 24 66
  Pseudomonas syringae pv. syringae B728a Psyr_4493 PAS:GGDEF insig. 24 56
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4493 PAS:GGDEF cofit 24 56
  Acidovorax sp. GW101-3H11 Ac3H11_1143 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) sig. 24 65
  Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 23 60
  Magnetospirillum magneticum AMB-1 AMB_RS13545 bifunctional diguanylate cyclase/phosphodiesterase insig. 23 63
  Shewanella oneidensis MR-1 SO0427 sensory box protein (NCBI ptt file) sig. 23 62
  Azospirillum sp. SherDot2 MPMX19_06128 hypothetical protein insig. 24 68
  Pseudomonas sp. BP01 JOY50_RS24630 bifunctional diguanylate cyclase/phosphodiesterase insig. 24 62
  Acidovorax sp. GW101-3H11 Ac3H11_2258 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 24 62
  Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 24 60
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 23 64
  Dechlorosoma suillum PS Dsui_2148 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 25 62
  Pseudomonas sp. RS175 PFR28_03785 hypothetical protein insig. 24 62
  Pseudomonas sp. DMC3 GFF3964 hypothetical protein insig. 24 62
  Paraburkholderia sabiae LMG 24235 QEN71_RS13125 EAL domain-containing protein insig. 23 62
  Dechlorosoma suillum PS Dsui_3161 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein sig. 24 60
  Pseudomonas stutzeri RCH2 Psest_4097 PAS domain S-box/diguanylate cyclase (GGDEF) domain strong 23 64