Homologs of CA265_RS11995 from Pedobacter sp. GW460-11-11-14-LB5

RNA polymerase subunit sigma
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 100 100
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12270 RNA polymerase subunit sigma insig. 59 100
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24230 RNA polymerase sigma factor strong 57 96
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16550 RNA polymerase sigma factor strong 52 99
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS16675 hypothetical protein insig. 53 100
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_10915 RNA polymerase subunit sigma strong 48 100
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1476 RNA polymerase sigma factor, sigma-70 family insig. 41 100
o Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS12805 RNA polymerase sigma factor strong 40 100
o Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 40 100
  Bacteroides ovatus ATCC 8483 BACOVA_01848 Sigma-70 region 2 strong 38 100
  Bacteroides ovatus ATCC 8483 BACOVA_02205 Sigma-70 region 2 insig. 37 100
  Bacteroides thetaiotaomicron VPI-5482 BT3457 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 37 100
  Bacteroides thetaiotaomicron VPI-5482 BT2569 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 36 100
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS05410 RNA polymerase sigma factor strong 37 98
  Bacteroides stercoris CC31F HMPREF1181_RS16950 RNA polymerase sigma factor strong 40 98
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 36 98
  Phocaeicola dorei CL03T12C01 ABI39_RS17450 RNA polymerase sigma factor strong 36 98
  Bacteroides stercoris CC31F HMPREF1181_RS02840 RNA polymerase sigma factor sig. 36 98
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS03770 RNA polymerase sigma factor strong 36 98
  Bacteroides thetaiotaomicron VPI-5482 BT1572 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 36 98
  Bacteroides ovatus ATCC 8483 BACOVA_03979 Sigma-70 region 2 strong 35 98
  Bacteroides thetaiotaomicron VPI-5482 BT2383 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 35 100
  Bacteroides thetaiotaomicron VPI-5482 BT1197 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 35 98
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS15765 RNA polymerase sigma factor strong 34 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0287 RNA polymerase sigma factor, sigma-70 family strong 40 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_19215 RNA polymerase subunit sigma sig. 38 99
  Mycobacterium tuberculosis H37Rv Rv3223c Alternative RNA polymerase sigma-E factor (sigma-24) SigH (RPOE) insig. 37 96
  Bifidobacterium breve UCC2003 BBR_RS16820 RNA polymerase sigma factor RpoE strong 32 99
  Azospirillum sp. SherDot2 MPMX19_00764 ECF RNA polymerase sigma factor EcfG insig. 32 90
o Phaeobacter inhibens DSM 17395 PGA1_c27070 RNA polymerase sigma factor 70 (ECF15 subgroup, ECF26 subgroup) insig. 34 92
  Azospirillum brasilense Sp245 AZOBR_RS06360 RNA polymerase subunit sigma-24 no data 32 92
  Bosea sp. OAE506 ABIE41_RS04095 sigma-70 family RNA polymerase sigma factor strong 33 99
  Dinoroseobacter shibae DFL-12 Dshi_3835 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 32 93
o Agrobacterium fabrum C58 Atu4160 RNA polymerase sigma factor strong 31 96
  Rhizobium sp. OAE497 ABIE40_RS21790 sigma-70 family RNA polymerase sigma factor cofit 33 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS00095 RNA polymerase sigma factor insig. 34 87
  Rhizobium sp. OAE497 ABIE40_RS27415 sigma-70 family RNA polymerase sigma factor insig. 33 88
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 31 96
  Azospirillum brasilense Sp245 AZOBR_RS10625 RNA polymerase sigma-70 factor insig. 33 93
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS14775 sigma-70 family RNA polymerase sigma factor strong 31 89
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05041 RNA polymerase sigma-70 factor, ECF subfamily insig. 30 93
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05043 RNA polymerase sigma-70 factor, ECF subfamily no data 32 93
  Caulobacter crescentus NA1000 CCNA_02977 RNA polymerase ECF-type sigma factor sigU strong 30 93
  Caulobacter crescentus NA1000 Δfur CCNA_02977 RNA polymerase ECF-type sigma factor sigU cofit 30 93
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 29 98
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 32 96
  Pectobacterium carotovorum WPP14 HER17_RS09715 sigma-70 family RNA polymerase sigma factor cofit 31 96
  Sinorhizobium meliloti 1021 SM_b21484 RNA polymerase sigma-E factor (sigma-24) protein insig. 37 86
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_06547 RNA polymerase sigma-70 factor, ECF subfamily insig. 33 87
  Burkholderia phytofirmans PsJN BPHYT_RS24740 RNA polymerase subunit sigma-24 sig. 34 87
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 32 96
o Paraburkholderia graminis OAS925 ABIE53_003943 RNA polymerase sigma-70 factor (ECF subfamily) sig. 30 93
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 30 89
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3411 RNA polymerase sigma factor, sigma-70 family insig. 35 86
  Agrobacterium fabrum C58 Atu5490 ECF family RNA polymerase sigma factor insig. 30 88
  Paraburkholderia sabiae LMG 24235 QEN71_RS23005 sigma-70 family RNA polymerase sigma factor insig. 31 95
o Dickeya dadantii 3937 DDA3937_RS11055 sigma-70 family RNA polymerase sigma factor insig. 30 98
o Dickeya dianthicola 67-19 HGI48_RS11075 sigma-70 family RNA polymerase sigma factor insig. 30 98
  Paraburkholderia graminis OAS925 ABIE53_006215 RNA polymerase sigma-70 factor (ECF subfamily) insig. 33 87
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 32 87
  Enterobacter asburiae PDN3 EX28DRAFT_2729 RNA polymerase sigma factor, sigma-70 family insig. 26 97
  Paraburkholderia graminis OAS925 ABIE53_002425 RNA polymerase sigma-70 factor (ECF subfamily) insig. 31 96
o Rahnella sp. WP5 EX31_RS05375 sigma-70 family RNA polymerase sigma factor insig. 31 96
  Bacteroides stercoris CC31F HMPREF1181_RS13000 RNA polymerase sigma factor sig. 33 77
  Bacteroides thetaiotaomicron VPI-5482 BT1103 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 33 77
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS08195 RNA polymerase sigma factor insig. 33 77
  Variovorax sp. SCN45 GFF215 RNA polymerase sigma-54 factor RpoN insig. 29 94
  Phaeobacter inhibens DSM 17395 PGA1_78p00070 'RNA polymerase sigma-70, ECF subfamily; ECF26 subgroup' no data 27 98
  Mycobacterium tuberculosis H37Rv Rv1221 Alternative RNA polymerase sigma factor SigE insig. 30 96
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_05124 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 96
  Cupriavidus basilensis FW507-4G11 RR42_RS32410 RNA polymerase subunit sigma-24 no data 28 95
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0603 RNA polymerase sigma factor, sigma-70 family sig. 31 88
  Burkholderia phytofirmans PsJN BPHYT_RS08240 RNA polymerase subunit sigma-24 sig. 31 95
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 31 95
  Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 31 92
  Caulobacter crescentus NA1000 CCNA_03589 RNA polymerase EcfG family sigma factor sigT strong 29 89
  Caulobacter crescentus NA1000 Δfur CCNA_03589 RNA polymerase EcfG family sigma factor sigT cofit 29 89
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 30 92
  Rhizobium sp. OAE497 ABIE40_RS03400 RNA polymerase sigma factor insig. 33 83
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01799 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 92
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02635 RNA polymerase sigma factor insig. 31 80
o Marinobacter adhaerens HP15 HP15_342 RNA polymerase sigma factor SigE insig. 29 92
  Paraburkholderia graminis OAS925 ABIE53_002003 RNA polymerase sigma factor (sigma-70 family) sig. 26 97
  Azospirillum brasilense Sp245 AZOBR_RS23735 RNA polymerase no data 31 86
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15905 RNA polymerase sigma factor cofit 29 89
  Bacteroides ovatus ATCC 8483 BACOVA_03939 Sigma-70 region 2 insig. 31 86
  Burkholderia phytofirmans PsJN BPHYT_RS08845 RNA polymerase sigma factor insig. 27 95
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS04025 RNA polymerase sigma factor insig. 31 90
  Rhodospirillum rubrum S1H Rru_A3287 Sigma-24 (FecI) (NCBI) no data 27 98
  Herbaspirillum seropedicae SmR1 HSERO_RS13530 RNA polymerase subunit sigma-24 no data 34 88
  Azospirillum sp. SherDot2 MPMX19_05043 hypothetical protein insig. 32 81
  Agrobacterium fabrum C58 Atu1485 ECF family sigma factor insig. 34 86
  Bacteroides thetaiotaomicron VPI-5482 BT3396 RNA polymerase ECF-type sigma factor (NCBI ptt file) strong 29 96
  Variovorax sp. SCN45 GFF5806 RNA polymerase ECF-type sigma factor insig. 28 99
  Mycobacterium tuberculosis H37Rv Rv0735 Probable alternative RNA polymerase sigma factor SigL insig. 31 91
  Azospirillum sp. SherDot2 MPMX19_01371 hypothetical protein insig. 34 86
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 31 95
  Rhizobium sp. OAE497 ABIE40_RS15675 sigma-70 family RNA polymerase sigma factor insig. 27 99
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS22010 RNA polymerase sigma factor insig. 30 96
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 33 95