Homologs of SO0628 from Shewanella oneidensis MR-1

GGDEF domain protein (NCBI ptt file)
SEED: Sensory box/GGDEF family protein

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Shewanella oneidensis MR-1 SO0628 GGDEF domain protein (NCBI ptt file) insig. 100 100
o Shewanella sp. ANA-3 Shewana3_0620 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 94 100
o Shewanella amazonensis SB2B Sama_2973 GGDEF domain-containing protein (RefSeq) insig. 66 99
o Shewanella loihica PV-4 Shew_3125 diguanylate cyclase/phosphodiesterase (RefSeq) insig. 47 96
  Acidovorax sp. GW101-3H11 Ac3H11_2446 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 43 61
  Pseudomonas sp. S08-1 OH686_21075 Sensory box/GGDEF family protein insig. 37 75
  Bosea sp. OAE506 ABIE41_RS19250 EAL domain-containing protein insig. 41 60
  Vibrio cholerae E7946 ATCC 55056 CSW01_00390 GGDEF domain-containing protein insig. 37 75
  Pseudomonas aeruginosa MRSN321 DY961_RS06515 diguanylate cyclase sig. 42 61
  Pseudomonas aeruginosa PA14 IKLFDK_05475 diguanylate cyclase insig. 42 61
  Pseudomonas aeruginosa PUPa3 DQ20_RS46285 diguanylate cyclase cofit 42 61
  Acidovorax sp. GW101-3H11 Ac3H11_4120 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 42 60
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2166 Sensory box/GGDEF family protein insig. 40 60
  Pseudomonas sp. BP01 JOY50_RS16180 EAL domain-containing protein insig. 40 60
  Pseudomonas fluorescens FW300-N2E3 AO353_02120 hypothetical protein strong 39 60
  Cupriavidus basilensis FW507-4G11 RR42_RS03995 diguanylate cyclase insig. 40 60
  Pseudomonas putida KT2440 PP_1761 diguanylate cyclase with phosphodiesterase domain strong 40 60
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_361 Sensory box/GGDEF family protein insig. 40 60
  Pseudomonas sp. DMC3 GFF4687 hypothetical protein cofit 39 60
  Pseudomonas orientalis W4I3 QF045_RS21100 EAL domain-containing protein cofit 38 60
  Pseudomonas fluorescens SBW25 PFLU_RS21140 EAL domain-containing protein cofit 39 60
  Pseudomonas fluorescens SBW25-INTG PFLU_RS21140 EAL domain-containing protein strong 39 60
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2530 Sensory box/GGDEF family protein strong 39 60
  Pseudomonas lactucae CFBP13502 GEMAOFIL_04056 hypothetical protein cofit 39 60
  Pseudomonas sp. SVBP6 COO64_RS06790 EAL domain-containing protein cofit 40 60
  Pseudomonas fluorescens FW300-N2C3 AO356_03515 hypothetical protein cofit 39 60
  Pseudomonas sp. RS175 PFR28_00896 hypothetical protein insig. 39 60
  Alteromonas macleodii MIT1002 MIT1002_00145 Cyclic di-GMP phosphodiesterase Gmr cofit 34 73
  Pseudomonas aeruginosa MRSN321 DY961_RS08185 EAL domain-containing protein sig. 39 61
  Pseudomonas aeruginosa PA14 IKLFDK_03805 PAS domain S-box protein insig. 39 61
  Rhodanobacter sp000427505 FW510-R12 LRK53_RS02790 EAL domain-containing protein insig. 39 62
  Pseudomonas simiae WCS417 PS417_19145 membrane protein strong 39 60
  Pseudomonas aeruginosa PUPa3 DQ20_RS44635 EAL domain-containing protein insig. 40 60
  Methylophilus sp. DMC18 GFF887 hypothetical protein cofit 39 59
  Rhodanobacter denitrificans MT42 LRK55_RS09660 EAL domain-containing protein insig. 38 62
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS10020 EAL domain-containing protein insig. 38 62
  Pseudomonas syringae pv. syringae B728a Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) cofit 38 60
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3655 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 38 60
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1842.1 Mlr3171 protein insig. 38 63
  Pseudomonas sp. S08-1 OH686_11905 hypothetical protein insig. 38 61
  Rhodanobacter sp. FW510-T8 OKGIIK_16275 Diguanylate cyclase insig. 38 64
  Shewanella amazonensis SB2B Sama_0388 putative diguanylate phosphodiesterase (RefSeq) strong 36 64
  Shewanella oneidensis MR-1 SO0437 sensory box protein (NCBI ptt file) strong 37 60
  Shewanella sp. ANA-3 Shewana3_0436 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) strong 37 60
  Shewanella loihica PV-4 Shew_3416 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 36 63
  Kangiella aquimarina DSM 16071 B158DRAFT_2394 diguanylate cyclase (GGDEF) domain strong 35 58
  Dechlorosoma suillum PS Dsui_0760 diguanylate cyclase (GGDEF) domain-containing protein cofit 36 60
  Acidovorax sp. GW101-3H11 Ac3H11_903 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 36 59
  Dechlorosoma suillum PS Dsui_2894 diguanylate cyclase (GGDEF) domain-containing protein cofit 34 60
  Pseudomonas sp. SVBP6 COO64_RS09675 bifunctional diguanylate cyclase/phosphodiesterase insig. 35 61
  Paraburkholderia sabiae LMG 24235 QEN71_RS35965 EAL domain-containing protein strong 34 59
  Pseudomonas aeruginosa PA14 IKLFDK_22535 bifunctional diguanylate cyclase/phosphodiesterase insig. 36 62
  Pseudomonas aeruginosa MRSN321 DY961_RS22900 EAL domain-containing protein insig. 36 62
  Pseudomonas aeruginosa PUPa3 DQ20_RS36445 EAL domain-containing protein insig. 36 62
  Rhodospirillum rubrum S1H Rru_A2763 Putative diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) (NCBI) insig. 36 61
  Pseudomonas segetis P6 ACVTMO_RS12875 DUF1631 family protein insig. 36 59
  Pseudomonas sp. BP01 JOY50_RS25465 bifunctional diguanylate cyclase/phosphodiesterase insig. 35 61
  Marinobacter adhaerens HP15 HP15_3980 diguanylate cyclase/phosphodiesterase insig. 34 61
  Pseudomonas putida KT2440 PP_2258 Sensory box protein insig. 34 67
  Rhizobium sp. OAE497 ABIE40_RS15540 EAL domain-containing protein insig. 33 60
  Shewanella amazonensis SB2B Sama_0378 sensory box protein (RefSeq) sig. 34 62
  Dechlorosoma suillum PS Dsui_3108 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 35 62
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2329 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) strong 34 61
  Shewanella sp. ANA-3 Shewana3_2929 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) insig. 32 67
  Pseudomonas sp. DMC3 GFF52 hypothetical protein insig. 36 60
  Pseudomonas fluorescens FW300-N2C3 AO356_14260 diguanylate cyclase insig. 35 62
  Shewanella loihica PV-4 Shew_2778 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) (RefSeq) insig. 34 64
  Pseudomonas fluorescens FW300-N2E3 AO353_00695 diguanylate cyclase strong 32 68
  Shewanella oneidensis MR-1 SO0341 sensory box protein (NCBI ptt file) insig. 33 62
  Dechlorosoma suillum PS Dsui_0894 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 32 64
  Dechlorosoma suillum PS Dsui_2365 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 30 75
  Herbaspirillum seropedicae SmR1 HSERO_RS18020 diguanylate cyclase insig. 29 81
  Pseudomonas sp. S08-1 OH686_08910 Phytochrome-like protein / Cph2 cofit 35 62
  Shewanella oneidensis MR-1 SO1500 sensory box protein (NCBI ptt file) strong 34 63
  Shewanella sp. ANA-3 Shewana3_3829 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) (RefSeq) cofit 33 62
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3860 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 31 67
  Pseudomonas aeruginosa PA14 IKLFDK_24035 GGDEF domain-containing protein insig. 31 76
  Pseudomonas syringae pv. syringae B728a Psyr_4642 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 36 62
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_4642 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) insig. 36 62
  Pseudomonas aeruginosa MRSN321 DY961_RS21370 EAL domain-containing protein strong 31 76
  Methylophilus sp. DMC18 GFF1786 hypothetical protein insig. 29 84
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_2512 sensory box/GGDEF domain/EAL domain protein insig. 35 60
  Shewanella oneidensis MR-1 SO0141 sensory box protein (NCBI ptt file) strong 32 61
  Pseudomonas fluorescens FW300-N2E3 AO353_07390 diguanylate cyclase insig. 35 60
  Dechlorosoma suillum PS Dsui_1564 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 33 61
  Pseudomonas aeruginosa PUPa3 DQ20_RS37920 EAL domain-containing protein strong 31 76
  Dechlorosoma suillum PS Dsui_1429 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein cofit 31 77
  Marinobacter adhaerens HP15 HP15_862 signal transduction protein containing a membrane domain, an EAL and a GGDEF domain insig. 34 61
  Marinobacter adhaerens HP15 HP15_68 sensory box/FOG: EAL domain/GGDEF domain containing protein insig. 34 62
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_4790 sensory box/GGDEF domain/EAL domain protein sig. 36 60
  Alteromonas macleodii MIT1002 MIT1002_00062 Bacteriophytochrome cph2 insig. 34 57
  Dechlorosoma suillum PS Dsui_1501 PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein insig. 34 64
  Pseudomonas sp. S08-1 OH686_19830 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 66
  Pseudomonas syringae pv. syringae B728a Psyr_3843 diguanylate cyclase/phosphodiesterase insig. 35 57
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_3843 diguanylate cyclase/phosphodiesterase insig. 35 57
  Methylophilus sp. DMC18 GFF82 hypothetical protein cofit 34 61
  Magnetospirillum magneticum AMB-1 AMB_RS18310 bifunctional diguanylate cyclase/phosphodiesterase cofit 32 62
  Paraburkholderia sabiae LMG 24235 QEN71_RS10745 EAL domain-containing protein insig. 34 61
  Acidovorax sp. GW101-3H11 Ac3H11_2498 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s) insig. 33 65
  Pseudomonas fluorescens GW456-L13 PfGW456L13_1185 sensory box/GGDEF domain/EAL domain protein insig. 35 60