Conservation of cofitness between RR42_RS05910 and RR42_RS09335 in Cupriavidus basilensis FW507-4G11

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS05910 DNA repair protein 1.0 RR42_RS09335 DNA polymerase II 0.46 15
Herbaspirillum seropedicae SmR1 0.55 HSERO_RS03060 DNA repair protein 0.67 HSERO_RS12200 DNA polymerase II low > 78
Paraburkholderia sabiae LMG 24235 0.55 QEN71_RS26535 DNA repair protein RecN 0.77 QEN71_RS13385 DNA polymerase II low > 153
Paraburkholderia graminis OAS925 0.54 ABIE53_000856 DNA repair protein RecN (Recombination protein N) 0.79 ABIE53_004018 DNA polymerase-2 low > 113
Paraburkholderia bryophila 376MFSha3.1 0.54 H281DRAFT_04692 DNA replication and repair protein RecN 0.78 H281DRAFT_01369 DNA damage-inducible DNA polymerase II low > 103
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS03560 DNA repair protein 0.79 BPHYT_RS23105 DNA polymerase low > 109
Variovorax sp. SCN45 0.41 GFF2357 DNA repair protein RecN 0.58 GFF7213 DNA polymerase II (EC 2.7.7.7) low > 127
Rahnella sp. WP5 0.38 EX31_RS21760 DNA repair protein RecN 0.75 EX31_RS03740 DNA polymerase II low > 89
Pseudomonas sp. S08-1 0.37 OH686_17050 DNA repair protein RecN 0.75 OH686_16850 DNA polymerase II low > 80
Pantoea sp. MT58 0.37 IAI47_04810 DNA repair protein RecN 0.69 IAI47_16050 DNA polymerase II low > 76
Escherichia coli BL21 0.37 ECD_02504 recombination and repair protein 0.71 ECD_00062 DNA polymerase II low > 61
Enterobacter sp. TBS_079 0.37 MPMX20_03486 DNA repair protein RecN 0.70 MPMX20_00754 DNA polymerase II low > 85
Escherichia coli Nissle 1917 0.37 ECOLIN_RS14775 DNA repair protein RecN 0.70 ECOLIN_RS00320 DNA polymerase II low > 55
Escherichia coli BW25113 0.37 b2616 recN recombination and repair protein (NCBI) 0.70 b0060 polB DNA polymerase II (NCBI) 0.32 33
Escherichia coli ECOR27 0.37 NOLOHH_12815 recN DNA repair protein RecN 0.71 NOLOHH_03140 polB DNA polymerase II low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01091 DNA repair protein RecN 0.70 OHPLBJKB_03598 DNA polymerase II low > 73
Escherichia coli ECRC62 0.37 BNILDI_11620 recN DNA repair protein RecN 0.70 BNILDI_08465 polB DNA polymerase II low > 75
Escherichia coli ECOR38 0.37 HEPCGN_20265 recN DNA repair protein RecN 0.70 HEPCGN_08785 polB DNA polymerase II low > 87
Dickeya dadantii 3937 0.37 DDA3937_RS04325 DNA repair protein RecN 0.70 DDA3937_RS18230 DNA polymerase II low > 74
Escherichia coli ECRC99 0.36 KEDOAH_07075 recN DNA repair protein RecN 0.70 KEDOAH_17360 polB DNA polymerase II — —
Escherichia coli ECRC102 0.36 NIAGMN_18915 recN DNA repair protein RecN 0.70 NIAGMN_08645 polB DNA polymerase II — —
Escherichia fergusonii Becca 0.36 EFB2_01277 DNA repair protein RecN 0.71 EFB2_03985 DNA polymerase II low > 86
Escherichia coli ECRC100 0.36 OKFHMN_21145 recN DNA repair protein RecN 0.70 OKFHMN_10795 polB DNA polymerase II low > 80
Escherichia coli ECRC101 0.36 MCAODC_11670 recN DNA repair protein RecN 0.70 MCAODC_01310 polB DNA polymerase II low > 87
Serratia liquefaciens MT49 0.36 IAI46_19635 DNA repair protein RecN 0.81 IAI46_03280 DNA polymerase II 0.54 5
Escherichia coli ECRC98 0.36 JDDGAC_24810 recN DNA repair protein RecN 0.70 JDDGAC_14390 polB DNA polymerase II low > 86
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2719 DNA repair protein RecN 0.70 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) low > 76
Pseudomonas fluorescens GW456-L13 0.36 PfGW456L13_5106 DNA repair protein RecN 0.78 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) low > 87
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3370 DNA repair protein RecN 0.77 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.19 88
Klebsiella michiganensis M5al 0.36 BWI76_RS21560 DNA repair protein RecN 0.68 BWI76_RS04575 DNA polymerase II low > 92
Pseudomonas fluorescens FW300-N1B4 0.36 Pf1N1B4_1178 DNA repair protein RecN 0.78 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) low > 87
Shewanella amazonensis SB2B 0.36 Sama_1026 recombination and repair protein (RefSeq) 0.38 Sama_1250 DNA polymerase II (RefSeq) 0.69 5
Pseudomonas sp. RS175 0.36 PFR28_00071 DNA repair protein RecN 0.77 PFR28_01299 DNA polymerase II low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.36 GFF4162 DNA repair protein RecN 0.70 GFF182 DNA polymerase II (EC 2.7.7.7) low > 78
Dickeya dianthicola 67-19 0.36 HGI48_RS04320 DNA repair protein RecN 0.70 HGI48_RS18165 DNA polymerase II low > 71
Dickeya dianthicola ME23 0.35 DZA65_RS04235 DNA repair protein RecN 0.70 DZA65_RS19305 DNA polymerase II low > 75
Pectobacterium carotovorum WPP14 0.35 HER17_RS17420 DNA repair protein RecN 0.71 HER17_RS02995 DNA polymerase II low > 75
Erwinia tracheiphila SCR3 0.35 LU632_RS16985 recN DNA repair protein RecN 0.72 LU632_RS02810 polB DNA polymerase II low > 74
Pseudomonas stutzeri RCH2 0.35 Psest_0962 DNA repair protein RecN 0.75 Psest_1519 DNA polymerase elongation subunit (family B) 0.35 17
Pseudomonas fluorescens FW300-N2C3 0.35 AO356_07510 DNA repair protein RecN 0.77 AO356_01325 DNA polymerase II 0.47 18
Pseudomonas fluorescens SBW25 0.35 PFLU_RS25910 DNA repair protein RecN 0.73 PFLU_RS10185 DNA polymerase II low > 109
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS25910 DNA repair protein RecN 0.73 PFLU_RS10185 DNA polymerase II low > 109
Pseudomonas simiae WCS417 0.34 PS417_24070 recombination and repair protein 0.74 PS417_09565 DNA polymerase II 0.21 37
Shewanella oneidensis MR-1 0.34 SO3462 recN DNA repair protein RecN (NCBI ptt file) 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E3 0.34 AO353_05660 DNA repair protein RecN 0.77 AO353_29350 DNA polymerase II 0.46 13
Shewanella sp. ANA-3 0.34 Shewana3_1104 recombination and repair protein (RefSeq) 0.38 Shewana3_2629 DNA polymerase II (RefSeq) low > 73
Pseudomonas syringae pv. syringae B728a 0.34 Psyr_4197 DNA replication and repair protein RecN 0.77 Psyr_2361 DNA damage-inducible DNA polymerase II low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.34 Psyr_4197 DNA replication and repair protein RecN 0.77 Psyr_2361 DNA damage-inducible DNA polymerase II low > 86
Pseudomonas putida KT2440 0.33 PP_4729 factor used in recombination and DNA repair 0.72 PP_2393 DNA polymerase II low > 96
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_04395 DNA repair protein RecN 0.50 CSW01_06130 DNA polymerase II low > 62
Shewanella loihica PV-4 0.32 Shew_1196 recombination and repair protein (RefSeq) 0.38 Shew_2482 DNA polymerase II (RefSeq) 0.58 13
Alteromonas macleodii MIT1002 0.31 MIT1002_01443 Recombination protein N 0.39 MIT1002_03358 DNA polymerase II low > 70

Not shown: 48 genomes with orthologs for RR42_RS05910 only; 2 genomes with orthologs for RR42_RS09335 only