Conservation of cofitness between RR42_RS14065 and RR42_RS02080 in Cupriavidus basilensis FW507-4G11

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS14065 serine peptidase 1.0 RR42_RS02080 ribosome hibernation promoting factor 0.36 19
Ralstonia solanacearum UW163 0.69 UW163_RS11925 peptidase 0.85 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.69 RALBFv3_RS14460 peptidase 0.85 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia solanacearum GMI1000 0.69 RS_RS05240 PDZ domain-containing protein 0.87 RS_RS02015 ribosomal subunit interface protein low > 80
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS10180 DegQ family serine endoprotease 0.85 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Ralstonia solanacearum PSI07 0.68 RPSI07_RS19000 PDZ domain-containing protein 0.84 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Paraburkholderia bryophila 376MFSha3.1 0.62 H281DRAFT_04358 serine protease Do 0.70 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Paraburkholderia graminis OAS925 0.62 ABIE53_003040 serine protease Do 0.69 ABIE53_000717 putative sigma-54 modulation protein low > 113
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS14390 peptidase 0.70 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS04590 DegQ family serine endoprotease 0.71 QEN71_RS01750 ribosome-associated translation inhibitor RaiA low > 153
Variovorax sp. SCN45 0.55 GFF3866 HtrA protease/chaperone protein 0.62 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF3342 HtrA protease/chaperone protein 0.62 GFF2612 Ribosome hibernation protein YhbH — —
Variovorax sp. OAS795 0.52 ABID97_RS08345 DegQ family serine endoprotease 0.63 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Acidovorax sp. GW101-3H11 0.52 Ac3H11_1570 HtrA protease/chaperone protein 0.64 Ac3H11_681 Ribosome hibernation protein YhbH — —
Castellaniella sp019104865 MT123 0.47 ABCV34_RS08340 DegQ family serine endoprotease 0.47 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA — —
Dechlorosoma suillum PS 0.47 Dsui_2455 periplasmic serine protease, Do/DeqQ family 0.48 Dsui_0703 ribosomal subunit interface protein low > 51
Pseudomonas putida KT2440 0.41 PP_1430 putative periplasmic serine endoprotease DegP-like 0.40 PP_0951 Ribosome hibernation promoting factor 0.20 44
Pseudomonas stutzeri RCH2 0.41 Psest_3096 periplasmic serine protease, Do/DeqQ family 0.44 Psest_3314 ribosomal subunit interface protein — —
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_2753 HtrA protease/chaperone protein 0.40 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas fluorescens FW300-N2C3 0.40 AO356_04560 serine peptidase 0.40 AO356_07040 hypothetical protein low > 104
Pseudomonas simiae WCS417 0.40 PS417_07135 serine peptidase 0.42 PS417_04340 ribosome hibernation promoting factor HPF — —
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_3326 HtrA protease/chaperone protein 0.40 Pf1N1B4_1081 Ribosome hibernation protein YhbH — —
Pseudomonas fluorescens SBW25 0.40 PFLU_RS07245 DegQ family serine endoprotease 0.41 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas sp. RS175 0.40 PFR28_00693 Periplasmic serine endoprotease DegP 0.41 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens GW456-L13 0.40 PfGW456L13_4513 HtrA protease/chaperone protein 0.43 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS07245 DegQ family serine endoprotease 0.41 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens FW300-N2E3 0.39 AO353_17640 serine peptidase 0.40 AO353_05185 hypothetical protein 0.26 43
Lysobacter sp. OAE881 0.39 ABIE51_RS13880 DegQ family serine endoprotease 0.31 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Dyella japonica UNC79MFTsu3.2 0.38 ABZR86_RS07170 DegQ family serine endoprotease 0.27 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.3679.1 Serine protease precursor MucD/AlgY associated with sigma factor RpoE 0.32 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Marinobacter adhaerens HP15 0.37 HP15_779 serine protease MucD precursor 0.42 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Rhodanobacter sp. FW510-T8 0.35 OKGIIK_07890 Periplasmic serine endoprotease DegP-like 0.30 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Rhodanobacter denitrificans FW104-10B01 0.35 LRK54_RS16950 Do family serine endopeptidase 0.29 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Rhodanobacter denitrificans MT42 0.35 LRK55_RS16665 Do family serine endopeptidase 0.29 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Escherichia coli ECRC98 0.25 JDDGAC_13850 degP serine endoprotease DegP 0.33 JDDGAC_21560 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC62 0.25 BNILDI_09070 degP serine endoprotease DegP 0.33 BNILDI_01800 Ribosome hibernation promoting factor low > 75
Escherichia coli BL21 0.25 ECD_00160 serine endoprotease (protease Do), membrane-associated 0.33 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 61
Escherichia coli ECRC102 0.25 NIAGMN_08105 degP serine endoprotease DegP 0.33 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli ECRC100 0.25 OKFHMN_10255 degP serine endoprotease DegP 0.33 OKFHMN_17935 Ribosome hibernation promoting factor low > 80
Escherichia coli ECRC99 0.25 KEDOAH_17900 degP serine endoprotease DegP 0.33 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECOR27 0.25 NOLOHH_02600 degP serine endoprotease DegP 0.33 NOLOHH_09735 Ribosome hibernation promoting factor low > 75
Escherichia coli BW25113 0.25 b0161 degP serine endoprotease (protease Do), membrane-associated (NCBI) 0.33 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76

Not shown: 15 genomes with orthologs for RR42_RS14065 only; 29 genomes with orthologs for RR42_RS02080 only