Conservation of cofitness between Psyr_0506 and Psyr_4631 in Pseudomonas syringae pv. syringae B728a

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.0 Psyr_4631 PrkA serine kinase 0.28 16
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0506 L-proline dehydrogenase / delta-1-pyrroline-5-carboxylate dehydrogenase 1.00 Psyr_4631 PrkA serine kinase low > 86
Pseudomonas simiae WCS417 0.91 PS417_02175 transcriptional regulator 0.96 PS417_25830 serine/threonine protein kinase low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3685 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.99 Pf6N2E2_4801 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 103
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1489 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.96 Pf1N1B4_2523 Serine protein kinase (prkA protein), P-loop containing low > 87
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_223 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.97 PfGW456L13_1196 Serine protein kinase (prkA protein), P-loop containing low > 87
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.96 PFLU_RS27485 PrkA family serine protein kinase 0.17 92
Pseudomonas fluorescens SBW25 0.91 PFLU_RS02230 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.96 PFLU_RS27485 PrkA family serine protein kinase low > 109
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_09015 transcriptional regulator 0.96 AO356_14315 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 104
Pseudomonas sp. RS175 0.91 PFR28_05053 Bifunctional protein PutA 0.96 PFR28_04068 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_12810 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.97 AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas putida KT2440 0.88 PP_4947 proline dehydrogenase/1-pyrroline-5-carboxylate dehydrogenase 0.98 PP_0397 protein kinase 0.17 51
Serratia liquefaciens MT49 0.76 IAI46_15745 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 IAI46_14375 protein kinase YeaG low > 86
Pseudomonas sp. S08-1 0.76 OH686_06735 Transcriptional repressor of PutA and PutP / Proline dehydrogenase / Delta-1-pyrroline-5-carboxylate dehydrogenase 0.94 OH686_15020 Uncharacterized protein YeaG low > 80
Rahnella sp. WP5 0.74 EX31_RS09420 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.78 EX31_RS06260 protein kinase YeaG low > 89
Escherichia coli ECRC99 0.74 KEDOAH_23140 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 KEDOAH_01400 yeaG protein kinase YeaG — —
Escherichia coli ECRC102 0.74 NIAGMN_23730 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 NIAGMN_01355 yeaG protein kinase YeaG — —
Escherichia coli ECRC98 0.74 JDDGAC_08215 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 JDDGAC_01285 yeaG protein kinase YeaG low > 86
Escherichia coli ECRC100 0.74 OKFHMN_04605 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 OKFHMN_26710 yeaG protein kinase YeaG low > 80
Escherichia coli ECRC101 0.74 MCAODC_23990 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 MCAODC_18700 yeaG protein kinase YeaG low > 87
Escherichia coli ECRC62 0.74 BNILDI_19670 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 BNILDI_16025 yeaG protein kinase YeaG low > 75
Escherichia coli BW25113 0.74 b1014 putA fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase (NCBI) 0.79 b1783 yeaG yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli Nissle 1917 0.74 ECOLIN_RS05290 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 ECOLIN_RS09940 protein kinase YeaG low > 55
Escherichia coli HS(pFamp)R (ATCC 700891) 0.74 OHPLBJKB_02652 Bifunctional protein PutA 0.79 OHPLBJKB_01949 hypothetical protein low > 73
Escherichia coli ECOR38 0.74 HEPCGN_23535 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 HEPCGN_05100 yeaG protein kinase YeaG low > 87
Escherichia coli ECOR27 0.74 NOLOHH_21505 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 NOLOHH_17240 yeaG protein kinase YeaG low > 75
Escherichia fergusonii Becca 0.74 EFB2_03066 Bifunctional protein PutA 0.79 EFB2_02211 hypothetical protein low > 86
Escherichia coli BL21 0.74 ECD_01017 fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.75 ECD_01752 protein kinase, endogenous substrate unidentified; autokinase low > 61
Klebsiella michiganensis M5al 0.73 BWI76_RS10795 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.79 BWI76_RS11485 serine protein kinase PrkA low > 92
Enterobacter asburiae PDN3 0.73 EX28DRAFT_1911 L-proline dehydrogenase (EC 1.5.99.8)/delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12) 0.80 EX28DRAFT_1776 putative serine protein kinase, PrkA low > 76
Enterobacter sp. TBS_079 0.73 MPMX20_01702 Bifunctional protein PutA 0.79 MPMX20_01840 hypothetical protein low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF3301 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.80 GFF3473 Serine protein kinase (prkA protein), P-loop containing low > 78
Pantoea sp. MT58 0.71 IAI47_08195 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 IAI47_08925 protein kinase YeaG low > 76
Dickeya dadantii 3937 0.71 DDA3937_RS20115 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 DDA3937_RS10245 PrkA family serine protein kinase low > 74
Cupriavidus basilensis FW507-4G11 0.70 RR42_RS20125 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.79 RR42_RS36485 serine/threonine protein kinase low > 128
Pectobacterium carotovorum WPP14 0.70 HER17_RS01110 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 HER17_RS11150 protein kinase YeaG low > 75
Dickeya dianthicola 67-19 0.70 HGI48_RS20255 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 HGI48_RS10255 PrkA family serine protein kinase low > 71
Dickeya dianthicola ME23 0.70 DZA65_RS21300 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 DZA65_RS10730 PrkA family serine protein kinase low > 75
Ralstonia sp. UNC404CL21Col 0.69 ABZR87_RS03970 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.80 ABZR87_RS14220 PrkA family serine protein kinase low > 80
Erwinia tracheiphila SCR3 0.69 LU632_RS13740 putA trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.79 LU632_RS13010 yeaG PrkA family serine protein kinase low > 74
Acidovorax sp. GW101-3H11 0.65 Ac3H11_2850 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.79 Ac3H11_1145 Serine protein kinase (prkA protein), P-loop containing low > 79
Variovorax sp. SCN45 0.64 GFF5175 Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.5.2) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.2.1.88) 0.80 GFF2932 Uncharacterized protein YeaG low > 127
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_02404 L-proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase 0.79 H281DRAFT_05232 putative serine protein kinase, PrkA low > 103
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS19355 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.79 BPHYT_RS11190 PrkA family serine protein kinase low > 109
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS29240 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.77 QEN71_RS07375 PrkA family serine protein kinase low > 153
Paraburkholderia graminis OAS925 0.60 ABIE53_000244 RHH-type proline utilization regulon transcriptional repressor/proline dehydrogenase/delta 1-pyrroline-5-carboxylate dehydrogenase 0.79 ABIE53_002318 serine protein kinase low > 113
Castellaniella sp019104865 MT123 0.57 ABCV34_RS05285 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.15 ABCV34_RS05540 serine protein kinase low > 48
Azospirillum sp. SherDot2 0.55 MPMX19_05932 Bifunctional protein PutA 0.71 MPMX19_02157 hypothetical protein low > 112
Sinorhizobium meliloti 1021 0.53 SMc02181 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase 0.68 SMc01267 hypothetical protein low > 103
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS00905 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.79 HSERO_RS21690 PrkA family serine protein kinase low > 78
Rhizobium sp. OAE497 0.52 ABIE40_RS23445 trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase 0.70 ABIE40_RS12550 PrkA family serine protein kinase low > 107
Alteromonas macleodii MIT1002 0.38 MIT1002_00637 Bifunctional protein PutA 0.80 MIT1002_01233 PrkA family serine protein kinase 0.60 1
Marinobacter adhaerens HP15 0.37 HP15_2688 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.82 HP15_2933 serine protein kinase, PrkA low > 73
Phaeobacter inhibens DSM 17395 0.36 PGA1_c11750 L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data) 0.68 PGA1_c02470 putative serine-protein kinase, PrkA type low > 62

Not shown: 10 genomes with orthologs for Psyr_0506 only; 9 genomes with orthologs for Psyr_4631 only