| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 1.0 | Psyr_4006 | | transcriptional regulator, TetR family | 0.26 | 17 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_4754 | | 16S rRNA m(2)G-966 methyltransferase | 1.00 | Psyr_4006 | | transcriptional regulator, TetR family | low | > 86 |
| Pseudomonas fluorescens FW300-N2E2 | 0.72 | Pf6N2E2_4579 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.71 | Pf6N2E2_2822 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 103 |
| Pseudomonas sp. S08-1 | 0.72 | OH686_14220 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.54 | OH686_16040 | | Transcriptional regulator, AcrR family | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.71 | Pf1N1B4_2320 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.76 | Pf1N1B4_3248 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.71 | AO356_13320 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.71 | AO356_04870 | | TetR family transcriptional regulator | low | > 104 |
| Pseudomonas fluorescens FW300-N2E3 | 0.71 | AO353_08265 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.76 | AO353_17305 | | TetR family transcriptional regulator | low | > 101 |
| Pseudomonas sp. RS175 | 0.71 | PFR28_04262 | | Ribosomal RNA small subunit methyltransferase D | 0.70 | PFR28_00633 | | HTH-type transcriptional regulator TtgR | low | > 88 |
| Pseudomonas fluorescens SBW25 | 0.71 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.74 | PFLU_RS06815 | | TetR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.71 | PFLU_RS28470 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.74 | PFLU_RS06815 | | TetR family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.71 | PfGW456L13_990 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.75 | PfGW456L13_4579 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 87 |
| Pseudomonas simiae WCS417 | 0.70 | PS417_26825 | | 16S rRNA methyltransferase | 0.74 | PS417_06780 | | TetR family transcriptional regulator | — | — |
| Pseudomonas putida KT2440 | 0.68 | PP_5114 | | putative adenine methyltransferase | 0.67 | PP_1387 | | Probable HTH-type transcriptional regulator TtgR | low | > 96 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.49 | OHPLBJKB_00238 | | Ribosomal RNA small subunit methyltransferase D | 0.36 | OHPLBJKB_03210 | | HTH-type transcriptional regulator AcrR | low | > 73 |
| Dickeya dadantii 3937 | 0.48 | DDA3937_RS00630 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.41 | DDA3937_RS05745 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 74 |
| Rahnella sp. WP5 | 0.48 | EX31_RS14835 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.37 | EX31_RS22480 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 89 |
| Escherichia fergusonii Becca | 0.48 | EFB2_00351 | | Ribosomal RNA small subunit methyltransferase D | 0.36 | EFB2_03594 | | HTH-type transcriptional regulator AcrR | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.48 | HER17_RS00465 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.40 | HER17_RS15730 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli ECOR38 | 0.48 | HEPCGN_15525 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | HEPCGN_06810 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 87 |
| Dickeya dianthicola 67-19 | 0.48 | HGI48_RS20760 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.40 | HGI48_RS05800 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 71 |
| Escherichia coli ECOR27 | 0.48 | NOLOHH_08500 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | NOLOHH_01130 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli ECRC62 | 0.48 | BNILDI_03015 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | BNILDI_22545 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli BW25113 | 0.48 | b3465 | yhhF | predicted methyltransferase (NCBI) | 0.36 | b0464 | acrR | DNA-binding transcriptional repressor (NCBI) | low | > 76 |
| Escherichia coli Nissle 1917 | 0.48 | ECOLIN_RS19815 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | ECOLIN_RS02760 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 55 |
| Escherichia coli ECRC98 | 0.48 | JDDGAC_20325 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | JDDGAC_11845 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 86 |
| Escherichia coli ECRC100 | 0.48 | OKFHMN_16695 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | OKFHMN_08195 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 80 |
| Escherichia coli BL21 | 0.48 | ECD_03314 | | 16S rRNA m(2)G966 methyltransferase, SAM-dependent | 0.36 | ECD_00415 | | transcriptional repressor | low | > 61 |
| Serratia liquefaciens MT49 | 0.48 | IAI46_00920 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.42 | IAI46_05195 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 86 |
| Escherichia coli ECRC102 | 0.48 | NIAGMN_14465 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | NIAGMN_06250 | acrR | multidrug efflux transporter transcriptional repressor AcrR | — | — |
| Escherichia coli ECRC99 | 0.48 | KEDOAH_11445 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | KEDOAH_19770 | acrR | multidrug efflux transporter transcriptional repressor AcrR | — | — |
| Dickeya dianthicola ME23 | 0.48 | DZA65_RS21770 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.40 | DZA65_RS06125 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 75 |
| Escherichia coli ECRC101 | 0.48 | MCAODC_07225 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.36 | MCAODC_27420 | acrR | multidrug efflux transporter transcriptional repressor AcrR | low | > 87 |
| Marinobacter adhaerens HP15 | 0.46 | HP15_3491 | | conserved hypothetical protein | 0.24 | HP15_3151 | | transcriptional regulator, TetR family | low | > 73 |
| Erwinia tracheiphila SCR3 | 0.45 | LU632_RS19285 | rsmD | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.41 | LU632_RS18175 | acrR | multidrug efflux transporter transcriptional repressor AcrR | 0.66 | 1 |
| Klebsiella michiganensis M5al | 0.44 | BWI76_RS26405 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.34 | BWI76_RS06785 | | DNA-binding transcriptional repressor AcrR | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.44 | GFF540 | | 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) | 0.36 | GFF4381 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | low | > 78 |
| Enterobacter sp. TBS_079 | 0.44 | MPMX20_04342 | | Ribosomal RNA small subunit methyltransferase D | 0.32 | MPMX20_01066 | | HTH-type transcriptional regulator AcrR | low | > 85 |
| Pantoea sp. MT58 | 0.44 | IAI47_01535 | | 16S rRNA (guanine(966)-N(2))-methyltransferase | 0.42 | IAI47_14505 | | multidrug efflux transporter transcriptional repressor AcrR | low | > 76 |
| Enterobacter asburiae PDN3 | 0.43 | EX28DRAFT_4299 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.36 | EX28DRAFT_2494 | | transcriptional regulator, TetR family | low | > 76 |
| Dechlorosoma suillum PS | 0.36 | Dsui_1027 | | RNA methyltransferase, RsmD family | 0.24 | Dsui_1873 | | transcriptional regulator | low | > 51 |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS02815 | | methyltransferase | 0.42 | BPHYT_RS16180 | | TetR family transcriptional regulator | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.34 | H281DRAFT_01968 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.42 | H281DRAFT_04172 | | transcriptional regulator, TetR family | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS01665 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.40 | QEN71_RS02515 | | TetR family transcriptional regulator | low | > 153 |
| Paraburkholderia graminis OAS925 | 0.33 | ABIE53_000701 | | 16S rRNA (guanine966-N2)-methyltransferase | 0.42 | ABIE53_003410 | | TetR/AcrR family acrAB operon transcriptional repressor | 0.33 | 17 |
| Herbaspirillum seropedicae SmR1 | 0.30 | HSERO_RS20695 | | methyltransferase | 0.36 | HSERO_RS02420 | | TetR family transcriptional regulator | — | — |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_3873 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.29 | Ac3H11_4450 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.29 | RR42_RS01990 | | methyltransferase | 0.40 | RR42_RS20640 | | TetR family transcriptional regulator | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.28 | GFF817 | | Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) | 0.32 | GFF3838 | | Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family | 0.59 | 67 |
| Ralstonia solanacearum PSI07 | 0.28 | RPSI07_RS22230 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.40 | RPSI07_RS23895 | | TetR family transcriptional regulator | 0.45 | 65 |
| Ralstonia solanacearum GMI1000 | 0.28 | RS_RS01920 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.40 | RS_RS00055 | | TetR family transcriptional regulator | low | > 80 |
| Ralstonia solanacearum UW163 | 0.28 | UW163_RS02510 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.40 | UW163_RS04125 | | TetR family transcriptional regulator | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.28 | RALBFv3_RS11070 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.40 | RALBFv3_RS09455 | | TetR family transcriptional regulator | low | > 76 |
| Ralstonia sp. UNC404CL21Col | 0.27 | ABZR87_RS06960 | | 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD | 0.40 | ABZR87_RS05305 | | TetR family transcriptional regulator | low | > 80 |
| Agrobacterium fabrum C58 | 0.23 | Atu0690 | | hypothetical protein | 0.21 | Atu3201 | | TetR family transcriptional regulator | low | > 89 |
Not shown: 30 genomes with orthologs for Psyr_4754 only; 4 genomes with orthologs for Psyr_4006 only