Conservation of cofitness between Psyr_0003 and Psyr_2087 in Pseudomonas syringae pv. syringae B728a

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) 0.33 16
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_2087 aconitase / 2-methylcitrate dehydratase (trans-methylaconitate-forming) low > 86
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.90 AO353_00890 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 101
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.89 PFLU_RS22680 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.89 PFLU_RS22680 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.90 Pf1N1B4_3821 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) low > 87
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.90 AO356_20875 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 104
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.89 GFF5232 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.89 QF045_RS22895 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.89 GEMAOFIL_04359 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.90 COO64_RS09910 acnD Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.90 PFR28_02925 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.90 Pf6N2E2_6063 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.89 PfGW456L13_4116 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) low > 87
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.88 JOY50_RS25740 acnD Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 84
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.89 PS417_21070 aconitate hydratase low > 88
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.88 PP_2336 aconitate hydratase 1 low > 96
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.85 MPMX49_02626 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) low > 75
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.82 OH686_01680 2-methylisocitrate dehydratase, Fe/S-dependent low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.87 IKLFDK_03435 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 98
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.80 Psest_2319 aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent — —
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.83 SO0343 acnA aconitate hydratase 1 (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.82 Shewana3_3827 aconitate hydratase (RefSeq) low > 73
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.81 Sama_3296 aconitate hydratase (RefSeq) low > 62
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.82 Shew_1822 aconitate hydratase (RefSeq) low > 60
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.78 CSW01_06745 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 62
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.80 HP15_1930 aconitate hydratase 1 — —
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.81 MIT1002_03131 Aconitate hydratase 1 — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.79 B158DRAFT_1345 aconitate hydratase 1/2-methylisocitrate dehydratase, Fe/S-dependent low > 40
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.78 MPMX26_02481 2-methylcitrate dehydratase (2-methyl-trans-aconitate forming) low > 36
Acinetobacter baumannii LAC-4 0.30 RR41_RS00015 DNA replication/repair protein RecF 0.78 RR41_RS18475 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 55
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.84 ABZR86_RS08435 Fe/S-dependent 2-methylisocitrate dehydratase AcnD low > 74
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.83 ABIE51_RS09495 Fe/S-dependent 2-methylisocitrate dehydratase AcnD — —
Xanthomonas campestris pv. campestris strain 8004 0.24 Xcc-8004.4.1 DNA recombination and repair protein RecF 0.84 Xcc-8004.3979.1 2-methylcitrate dehydratase FeS dependent (EC 4.2.1.79) low > 74
Parabacteroides merdae CL09T00C40 0.18 HMPREF1078_RS14620 DNA replication and repair protein RecF 0.12 HMPREF1078_RS07515 aconitate hydratase low > 61
Bacteroides stercoris CC31F 0.17 HMPREF1181_RS06185 DNA replication and repair protein RecF 0.12 HMPREF1181_RS08305 aconitate hydratase low > 56
Bacteroides ovatus ATCC 8483 0.17 BACOVA_05088 DNA replication and repair protein RecF 0.12 BACOVA_03310 aconitate hydratase low > 96
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.12 CA265_RS16405 aconitate hydratase low > 88
Bacteroides thetaiotaomicron VPI-5482 0.16 BT4255 DNA replication and repair protein RecF, ABC family ATPase (NCBI ptt file) 0.11 BT2072 aconitate hydratase (NCBI ptt file) low > 81
Phocaeicola vulgatus CL09T03C04 0.16 HMPREF1058_RS17135 DNA replication and repair protein RecF 0.11 HMPREF1058_RS14325 aconitate hydratase low > 67
Phocaeicola dorei CL03T12C01 0.15 ABI39_RS13135 DNA replication and repair protein RecF 0.11 ABI39_RS09955 aconitate hydratase low > 72
Cellulophaga baltica 18 0.15 M666_RS11055 DNA replication and repair protein RecF 0.11 M666_RS09490 aconitate hydratase — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.12 ABZR88_RS16750 aconitate hydratase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.12 CA264_17475 DNA replication and repair protein RecF 0.11 CA264_10730 aconitate hydratase — —

Not shown: 56 genomes with orthologs for Psyr_0003 only; 16 genomes with orthologs for Psyr_2087 only