Conservation of cofitness between Pf6N2E2_5960 and Pf6N2E2_3600 in Pseudomonas fluorescens FW300-N2E2

56 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E2 1.0 Pf6N2E2_5960 Putative deoxyribonuclease YcfH 1.0 Pf6N2E2_3600 Fe-S OXIDOREDUCTASE (1.8.-.-) 0.36 11
Pseudomonas fluorescens FW300-N2C3 0.99 AO356_20205 hydrolase TatD 0.99 AO356_08575 YgiQ family radical SAM protein low > 104
Pseudomonas sp. RS175 0.96 PFR28_03002 putative metal-dependent hydrolase YcfH 0.96 PFR28_05137 hypothetical protein low > 88
Pseudomonas sp. DMC3 0.93 GFF4749 putative metal-dependent hydrolase YcfH 0.95 GFF3238 hypothetical protein low > 89
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_2112 Putative deoxyribonuclease YcfH 0.96 PfGW456L13_137 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_01325 hydrolase TatD 0.97 AO353_13235 YgiQ family radical SAM protein low > 101
Pseudomonas simiae WCS417 0.91 PS417_21405 hydrolase TatD 0.95 PS417_02590 hypothetical protein low > 88
Pseudomonas lactucae CFBP13502 0.90 GEMAOFIL_04425 putative metal-dependent hydrolase YcfH 0.95 GEMAOFIL_00755 hypothetical protein low > 93
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS23020 TatD family hydrolase 0.95 PFLU_RS02660 YgiQ family radical SAM protein low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS23020 TatD family hydrolase 0.95 PFLU_RS02660 YgiQ family radical SAM protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_420 Putative deoxyribonuclease YcfH 0.96 Pf1N1B4_1396 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1655 TatD-related deoxyribonuclease 0.94 Psyr_0587 Radical SAM low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1655 TatD-related deoxyribonuclease 0.94 Psyr_0587 Radical SAM low > 86
Pseudomonas putida KT2440 0.86 PP_1967 tRNA D-aminoacylase 0.91 PP_4872 putative enzyme of unknown function low > 96
Pseudomonas stutzeri RCH2 0.85 Psest_1696 hydrolase, TatD family 0.83 Psest_0701 uncharacterized radical SAM protein YgiQ low > 67
Pseudomonas sp. BP01 0.85 JOY50_RS16755 TatD family hydrolase 0.91 JOY50_RS17365 YgiQ family radical SAM protein low > 84
Pseudomonas sp. S08-1 0.84 OH686_22180 Uncharacterized metal-dependent hydrolase YcfH 0.88 OH686_15955 UPF0313 [4Fe-4S] protein YgiQ low > 80
Pseudomonas sp. SVBP6 0.82 COO64_RS05770 TatD family hydrolase 0.92 COO64_RS17995 YgiQ family radical SAM protein low > 93
Pseudomonas aeruginosa PA14 0.80 IKLFDK_15055 hydrolase TatD 0.86 IKLFDK_28910 YgiQ family radical SAM protein low > 100
Shewanella loihica PV-4 0.51 Shew_1582 TatD family hydrolase (RefSeq) 0.60 Shew_0233 hypothetical protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.51 Sama_2040 TatD family hydrolase (RefSeq) 0.60 Sama_3349 hypothetical protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_10060 YchF/TatD family DNA exonuclease 0.62 CSW01_08605 YgiQ family radical SAM protein low > 62
Alteromonas macleodii MIT1002 0.50 MIT1002_01740 putative deoxyribonuclease YcfH 0.63 MIT1002_01793 ribosomal protein S12 methylthiotransferase low > 70
Methylophilus sp. DMC18 0.49 GFF632 putative metal-dependent hydrolase YcfH 0.65 GFF83 hypothetical protein low > 43
Shewanella oneidensis MR-1 0.49 SO2610 hydrolase, TatD family (NCBI ptt file) 0.61 SO0311 hypothetical Fe-S oxidoreductase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.49 Shewana3_1769 TatD family hydrolase (RefSeq) 0.61 Shewana3_3874 hypothetical protein (RefSeq) low > 73
Rahnella sp. WP5 0.48 EX31_RS24470 metal-dependent hydrolase 0.62 EX31_RS04200 YgiQ family radical SAM protein low > 89
Dechlorosoma suillum PS 0.47 Dsui_2652 hydrolase, TatD family 0.63 Dsui_2420 uncharacterized radical SAM protein YgiQ low > 51
Serratia liquefaciens MT49 0.47 IAI46_09825 metal-dependent hydrolase 0.62 IAI46_21835 YgiQ family radical SAM protein low > 86
Klebsiella michiganensis M5al 0.46 BWI76_RS11125 metal-dependent hydrolase 0.63 BWI76_RS24310 YgiQ family radical SAM protein low > 92
Klebsiella pneumoniae MKP103 0.46 KDGMDA_18730 metal-dependent hydrolase 0.63 KDGMDA_05150 YgiQ family radical SAM protein low > 95
Enterobacter sp. TBS_079 0.45 MPMX20_01780 putative metal-dependent hydrolase YcfH 0.63 MPMX20_03857 hypothetical protein 0.16 59
Enterobacter asburiae PDN3 0.45 EX28DRAFT_1829 hydrolase, TatD family 0.63 EX28DRAFT_3051 uncharacterized radical SAM protein YgiQ low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.45 GFF3382 Putative deoxyribonuclease YcfH 0.63 GFF3129 Probable Fe-S oxidoreductase family 2 low > 78
Escherichia coli ECRC99 0.44 KEDOAH_24215 ycfH metal-dependent hydrolase 0.63 KEDOAH_09230 ygiQ YgiQ family radical SAM protein — —
Escherichia coli ECRC100 0.44 OKFHMN_03540 ycfH metal-dependent hydrolase 0.63 OKFHMN_18915 ygiQ YgiQ family radical SAM protein low > 79
Escherichia coli ECRC98 0.44 JDDGAC_07200 ycfH metal-dependent hydrolase 0.63 JDDGAC_22550 ygiQ YgiQ family radical SAM protein low > 87
Escherichia coli Nissle 1917 0.44 ECOLIN_RS06350 metal-dependent hydrolase 0.63 ECOLIN_RS17355 YgiQ family radical SAM protein low > 55
Escherichia coli BW25113 0.44 b1100 ycfH predicted metallodependent hydrolase (NCBI) 0.63 b4469 ygiQ hypothetical protein (NCBI) low > 76
Escherichia coli ECOR38 0.44 HEPCGN_23940 ycfH metal-dependent hydrolase 0.63 HEPCGN_17785 ygiQ YgiQ family radical SAM protein low > 88
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_02566 putative metal-dependent hydrolase YcfH 0.63 OHPLBJKB_00686 hypothetical protein low > 74
Escherichia coli ECRC102 0.44 NIAGMN_24290 ycfH metal-dependent hydrolase 0.63 NIAGMN_16680 ygiQ YgiQ family radical SAM protein low > 80
Escherichia coli ECRC62 0.44 BNILDI_19230 ycfH metal-dependent hydrolase 0.63 BNILDI_00820 ygiQ YgiQ family radical SAM protein low > 75
Escherichia coli BL21 0.44 ECD_01096 putative DNase 0.63 ECD_02888 Radical SAM superfamily protein low > 61
Escherichia coli ECRC101 0.44 MCAODC_22900 ycfH metal-dependent hydrolase 0.63 MCAODC_09430 ygiQ YgiQ family radical SAM protein low > 88
Escherichia coli ECOR27 0.44 NOLOHH_21070 ycfH metal-dependent hydrolase 0.63 NOLOHH_10695 ygiQ YgiQ family radical SAM protein — —
Escherichia fergusonii Becca 0.44 EFB2_02875 putative metal-dependent hydrolase YcfH 0.63 EFB2_00795 hypothetical protein low > 86
Acinetobacter baumannii LAC-4 0.44 RR41_RS12075 TatD family hydrolase 0.66 RR41_RS17985 YgiQ family radical SAM protein low > 55
Acinetobacter radioresistens SK82 0.44 MPMX26_01224 putative metal-dependent hydrolase YcfH 0.66 MPMX26_00127 hypothetical protein low > 36
Variovorax sp. OAS795 0.43 ABID97_RS16000 TatD family hydrolase 0.68 ABID97_RS14400 YgiQ family radical SAM protein low > 91
Xanthobacter sp. DMC5 0.43 GFF695 D-aminoacyl-tRNA deacylase 0.59 GFF13 hypothetical protein — —
Variovorax sp. SCN45 0.43 GFF34 Uncharacterized metal-dependent hydrolase YcfH 0.68 GFF1034 UPF0313 [4Fe-4S] protein YgiQ low > 127
Rhodopseudomonas palustris CGA009 0.43 TX73_014390 TatD family hydrolase 0.58 TX73_003515 YgiQ family radical SAM protein low > 86
Azospirillum sp. SherDot2 0.43 MPMX19_01469 putative metal-dependent hydrolase YcfH 0.59 MPMX19_06038 hypothetical protein low > 112
Hydrogenophaga sp. GW460-11-11-14-LB1 0.42 GFF4665 Putative deoxyribonuclease YcfH 0.68 GFF4814 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 90
Acidovorax sp. GW101-3H11 0.41 Ac3H11_2488 Putative deoxyribonuclease YcfH 0.67 Ac3H11_4121 Fe-S OXIDOREDUCTASE (1.8.-.-) low > 79
Rhodospirillum rubrum S1H 0.41 Rru_A1700 TatD-related deoxyribonuclease (NCBI) 0.58 Rru_A2003 Radical SAM (NCBI) low > 58

Not shown: 46 genomes with orthologs for Pf6N2E2_5960 only; 2 genomes with orthologs for Pf6N2E2_3600 only