Conservation of cofitness between PP_1907 and PP_5337 in Pseudomonas putida KT2440

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1907 Hydrolase, haloacid dehalogenase-like family 1.0 PP_5337 LysR family transcriptional regulator 0.20 14
Pseudomonas fluorescens FW300-N2E3 0.69 AO353_01400 HAD family hydrolase 0.90 AO353_09945 LysR family transcriptional regulator low > 101
Pseudomonas simiae WCS417 0.68 PS417_21475 HAD family hydrolase 0.91 PS417_28125 LysR family transcriptional regulator — —
Pseudomonas fluorescens SBW25 0.68 PFLU_RS23090 HAD-IA family hydrolase 0.91 PFLU_RS29810 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens SBW25-INTG 0.68 PFLU_RS23090 HAD-IA family hydrolase 0.91 PFLU_RS29810 LysR family transcriptional regulator low > 109
Pseudomonas fluorescens GW456-L13 0.67 PfGW456L13_2098 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.90 PfGW456L13_743 Transcriptional regulator low > 87
Pseudomonas fluorescens FW300-N1B4 0.67 Pf1N1B4_458 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.90 Pf1N1B4_2026 Transcriptional regulator low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_1640 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 0.90 Psyr_5050 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_1640 HAD-superfamily hydrolase, subfamily IA, variant 3:HAD-superfamily hydrolase, subfamily IA, variant 1 0.90 Psyr_5050 transcriptional regulator, LysR family low > 86
Pseudomonas fluorescens FW300-N2C3 0.66 AO356_20130 HAD family hydrolase 0.90 AO356_11085 LysR family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.66 PFR28_03017 hypothetical protein 0.90 PFR28_04497 HTH-type transcriptional regulator YjiE low > 88
Pseudomonas fluorescens FW300-N2E2 0.66 Pf6N2E2_5945 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.89 Pf6N2E2_4084 Transcriptional regulator low > 103
Pseudomonas sp. S08-1 0.58 OH686_22100 phosphoglycolate phosphatase 0.78 OH686_13320 LysR-family transcriptional regulator low > 80
Pseudomonas stutzeri RCH2 0.55 Psest_1681 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 0.80 Psest_4073 Transcriptional regulator — —
Variovorax sp. SCN45 0.36 GFF3848 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.33 GFF4595 Transcriptional regulator low > 127
Paraburkholderia graminis OAS925 0.35 ABIE53_003057 phosphoglycolate phosphatase 0.32 ABIE53_003512 DNA-binding transcriptional LysR family regulator low > 113
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS04505 HAD-IA family hydrolase 0.33 QEN71_RS33805 LysR substrate-binding domain-containing protein low > 153
Marinobacter adhaerens HP15 0.35 HP15_2220 HAD-superfamily hydrolase, subfamily IA, variant 3 0.26 HP15_205 protein containing bacterial regulatory protein, LysR domain low > 73
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04341 phosphoglycolate phosphatase 0.32 H281DRAFT_04272 transcriptional regulator, LysR family — —
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS14475 HAD family hydrolase 0.32 BPHYT_RS16710 LysR family transcriptional regulator low > 109
Variovorax sp. OAS795 0.34 ABID97_RS08255 HAD-IA family hydrolase 0.34 ABID97_RS05925 LysR substrate-binding domain-containing protein low > 91
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS09420 HAD family hydrolase 0.35 HSERO_RS19265 LysR family transcriptional regulator low > 78
Acidovorax sp. GW101-3H11 0.33 Ac3H11_1589 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.34 Ac3H11_1953 Transcriptional regulator low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF3320 Similar to phosphoglycolate phosphatase, clustered with ribosomal large subunit pseudouridine synthase C 0.35 GFF518 Transcriptional regulator low > 90
Ralstonia solanacearum PSI07 0.32 RPSI07_RS19080 HAD family hydrolase 0.33 RPSI07_RS21665 LysR family transcriptional regulator low > 81
Ralstonia solanacearum GMI1000 0.32 RS_RS05160 haloacid dehalogenase 0.32 RS_RS02375 LysR family transcriptional regulator low > 80
Cupriavidus basilensis FW507-4G11 0.32 RR42_RS14150 haloacid dehalogenase 0.35 RR42_RS29580 LysR family transcriptional regulator low > 128
Ralstonia solanacearum IBSBF1503 0.32 RALBFv3_RS14380 haloacid dehalogenase 0.33 RALBFv3_RS11545 LysR family transcriptional regulator low > 76
Ralstonia solanacearum UW163 0.32 UW163_RS11845 haloacid dehalogenase 0.33 UW163_RS02040 LysR family transcriptional regulator — —
Ralstonia sp. UNC404CL21Col 0.31 ABZR87_RS10095 HAD-IA family hydrolase 0.33 ABZR87_RS07510 LysR family transcriptional regulator low > 80
Azospirillum brasilense Sp245 0.27 AZOBR_RS06920 haloacid dehalogenase 0.23 AZOBR_RS17550 LysR family transcriptional regulator low > 97
Sphingomonas koreensis DSMZ 15582 0.27 Ga0059261_1034 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 0.27 Ga0059261_2946 Transcriptional regulator low > 68
Azospirillum sp. SherDot2 0.26 MPMX19_01717 Pyrophosphatase PpaX 0.22 MPMX19_05675 HTH-type transcriptional regulator YjiE low > 112
Bosea sp. OAE506 0.25 ABIE41_RS14720 HAD-IA family hydrolase 0.22 ABIE41_RS16420 LysR family transcriptional regulator low > 77
Phaeobacter inhibens DSM 17395 0.25 PGA1_c01960 putative hydrolase 0.29 PGA1_262p00990 transcriptional regulator, LysR family low > 62
Sinorhizobium meliloti 1021 0.24 SMc01276 phosphoglycolate phosphatase 0.25 SMa0097 LysR family transcriptional regulator low > 103
Dinoroseobacter shibae DFL-12 0.23 Dshi_0316 HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq) 0.24 Dshi_1440 transcriptional regulator, LysR family (RefSeq) low > 64
Agrobacterium fabrum C58 0.23 Atu1472 hydrolase 0.30 Atu2512 transcriptional regulator, LysR family low > 89
Dickeya dianthicola 67-19 0.23 HGI48_RS00375 HAD-IA family hydrolase 0.31 HGI48_RS07255 hypochlorite stress DNA-binding transcriptional regulator HypT low > 71
Dickeya dadantii 3937 0.23 DDA3937_RS20870 HAD family hydrolase 0.30 DDA3937_RS07390 hypochlorite stress DNA-binding transcriptional regulator HypT low > 74
Dickeya dianthicola ME23 0.23 DZA65_RS00375 HAD family hydrolase 0.31 DZA65_RS07765 hypochlorite stress DNA-binding transcriptional regulator HypT low > 75

Not shown: 18 genomes with orthologs for PP_1907 only; 12 genomes with orthologs for PP_5337 only