Conservation of cofitness between PP_5310 and PP_4129 in Pseudomonas putida KT2440

58 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5310 junction-specific ATP-dependent DNA helicase 1.0 PP_4129 NADH:ubiquinone oxidoreductase, membrane subunit L 0.48 14
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS29550 ATP-dependent DNA helicase RecG 0.91 PFLU_RS18665 NADH-quinone oxidoreductase subunit L low > 109
Pseudomonas fluorescens FW300-N1B4 0.89 Pf1N1B4_2105 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.88 Pf1N1B4_4030 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) low > 87
Pseudomonas fluorescens GW456-L13 0.89 PfGW456L13_772 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.90 PfGW456L13_2623 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) low > 87
Pseudomonas simiae WCS417 0.89 PS417_27870 ATP-dependent DNA helicase RecG 0.91 PS417_16625 NADH-quinone oxidoreductase subunit L — —
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_09320 ATP-dependent DNA helicase RecG 0.91 AO353_27790 NADH-quinone oxidoreductase subunit L — —
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.87 Psyr_3207 NADH dehydrogenase subunit L — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_0201 ATP-dependent DNA helicase RecG 0.87 Psyr_3207 NADH dehydrogenase subunit L — —
Pseudomonas sp. RS175 0.87 PFR28_04435 ATP-dependent DNA helicase RecG 0.93 PFR28_02637 NADH-quinone oxidoreductase subunit L — —
Pseudomonas fluorescens FW300-N2E2 0.87 Pf6N2E2_4352 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.89 Pf6N2E2_267 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) — —
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_12380 ATP-dependent DNA helicase RecG 0.90 AO356_22020 NADH-quinone oxidoreductase subunit L — —
Pseudomonas sp. S08-1 0.82 OH686_13505 ATP-dependent DNA helicase RecG 0.76 OH686_00105 NADH-ubiquinone oxidoreductase chain L low > 80
Pantoea sp. MT58 0.56 IAI47_00500 ATP-dependent DNA helicase RecG 0.67 IAI47_06410 NADH-quinone oxidoreductase subunit L low > 76
Escherichia coli ECRC98 0.56 JDDGAC_19170 recG ATP-dependent DNA helicase RecG 0.67 JDDGAC_26855 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC99 0.56 KEDOAH_12600 recG ATP-dependent DNA helicase RecG 0.67 KEDOAH_05305 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC101 0.56 OKFHMN_15545 recG ATP-dependent DNA helicase RecG 0.67 OKFHMN_22890 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC102 0.56 NIAGMN_13305 recG ATP-dependent DNA helicase RecG 0.67 NIAGMN_20660 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia coli ECRC101 0.56 MCAODC_06055 recG ATP-dependent DNA helicase RecG 0.67 MCAODC_13930 nuoL NADH-quinone oxidoreductase subunit L — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF355 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.67 GFF1881 NADH-ubiquinone oxidoreductase chain L (EC 1.6.5.3) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_00049 ATP-dependent DNA helicase RecG 0.67 OHPLBJKB_01428 NADH-quinone oxidoreductase subunit L low > 73
Serratia liquefaciens MT49 0.56 IAI46_24905 ATP-dependent DNA helicase RecG 0.66 IAI46_17660 NADH-quinone oxidoreductase subunit L low > 86
Escherichia coli ECOR27 0.56 NOLOHH_07425 recG ATP-dependent DNA helicase RecG 0.67 NOLOHH_14510 nuoL NADH-quinone oxidoreductase subunit L low > 57
Escherichia coli ECRC62 0.56 BNILDI_04090 recG ATP-dependent DNA helicase RecG 0.67 BNILDI_13430 nuoL NADH-quinone oxidoreductase subunit L — —
Escherichia fergusonii Becca 0.56 EFB2_00136 ATP-dependent DNA helicase RecG 0.67 EFB2_01581 NADH-quinone oxidoreductase subunit L low > 86
Erwinia tracheiphila SCR3 0.56 LU632_RS22190 recG ATP-dependent DNA helicase RecG 0.67 LU632_RS08015 nuoL NADH-quinone oxidoreductase subunit L low > 74
Escherichia coli ECOR38 0.56 HEPCGN_14365 recG ATP-dependent DNA helicase RecG 0.67 HEPCGN_22095 nuoL NADH-quinone oxidoreductase subunit L low > 85
Rahnella sp. WP5 0.56 EX31_RS15820 ATP-dependent DNA helicase RecG 0.67 EX31_RS19385 NADH-quinone oxidoreductase subunit L low > 89
Pectobacterium carotovorum WPP14 0.56 HER17_RS21395 ATP-dependent DNA helicase RecG 0.67 HER17_RS07175 NADH-quinone oxidoreductase subunit L low > 75
Escherichia coli BL21 0.56 ECD_03509 ATP-dependent DNA helicase 0.67 ECD_02203 NADH:ubiquinone oxidoreductase, membrane subunit L low > 60
Enterobacter asburiae PDN3 0.56 EX28DRAFT_3901 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.67 EX28DRAFT_0332 proton-translocating NADH-quinone oxidoreductase, chain L low > 76
Escherichia coli BW25113 0.56 b3652 recG ATP-dependent DNA helicase (NCBI) 0.67 b2278 nuoL NADH dehydrogenase subunit L (NCBI) low > 76
Escherichia coli Nissle 1917 0.56 ECOLIN_RS20800 ATP-dependent DNA helicase RecG 0.67 ECOLIN_RS13235 NADH-quinone oxidoreductase subunit L low > 52
Shewanella oneidensis MR-1 0.55 SO4364 recG ATP-dependent DNA helicase RecG (NCBI ptt file) 0.69 SO1011 nuoL NADH dehydrogenase I, L subunit (NCBI ptt file) low > 76
Dickeya dadantii 3937 0.55 DDA3937_RS00170 ATP-dependent DNA helicase RecG 0.65 DDA3937_RS14285 NADH-quinone oxidoreductase subunit L — —
Enterobacter sp. TBS_079 0.55 MPMX20_00084 ATP-dependent DNA helicase RecG 0.67 MPMX20_03208 NADH-quinone oxidoreductase subunit L low > 85
Acinetobacter radioresistens SK82 0.55 MPMX26_02732 ATP-dependent DNA helicase RecG 0.53 MPMX26_02545 NADH-quinone oxidoreductase subunit L — —
Dickeya dianthicola ME23 0.55 DZA65_RS22160 ATP-dependent DNA helicase RecG 0.65 DZA65_RS14935 NADH-quinone oxidoreductase subunit L — —
Klebsiella michiganensis M5al 0.55 BWI76_RS27440 DNA helicase RecG 0.65 BWI76_RS20140 NADH-quinone oxidoreductase subunit L low > 92
Dickeya dianthicola 67-19 0.55 HGI48_RS21190 ATP-dependent DNA helicase RecG 0.65 HGI48_RS14260 NADH-quinone oxidoreductase subunit L low > 71
Variovorax sp. OAS795 0.41 ABID97_RS01575 ATP-dependent DNA helicase RecG 0.28 ABID97_RS20440 NADH-quinone oxidoreductase subunit L — —
Magnetospirillum magneticum AMB-1 0.35 AMB_RS12400 ATP-dependent DNA helicase RecG 0.29 AMB_RS13955 NADH-quinone oxidoreductase subunit L — —
Sinorhizobium meliloti 1021 0.35 SMc00228 ATP-dependent DNA helicase RecG 0.28 SMc01925 NADH dehydrogenase subunit L — —
Rhizobium sp. OAE497 0.35 ABIE40_RS09300 ATP-dependent DNA helicase RecG 0.26 ABIE40_RS07240 NADH-quinone oxidoreductase subunit L — —
Azospirillum brasilense Sp245 0.35 AZOBR_RS09850 ATP-dependent DNA helicase RecG 0.29 AZOBR_RS07220 NADH:ubiquinone oxidoreductase subunit L — —
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS02470 ATP-dependent DNA helicase RecG 0.23 ABI39_RS08505 NADH-quinone oxidoreductase subunit L low > 72
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS08295 ATP-dependent DNA helicase RecG 0.23 HMPREF1058_RS13300 NADH-quinone oxidoreductase subunit L low > 67
Synechococcus elongatus PCC 7942 0.34 Synpcc7942_1079 recG ATP-dependent DNA helicase RecG 0.23 Synpcc7942_1977 ndhF1 NAD(P)H-quinone oxidoreductase subunit F — —
Azospirillum sp. SherDot2 0.34 MPMX19_00951 ATP-dependent DNA helicase RecG 0.29 MPMX19_01735 NADH-quinone oxidoreductase subunit L — —
Bacteroides stercoris CC31F 0.33 HMPREF1181_RS06615 ATP-dependent DNA helicase RecG 0.24 HMPREF1181_RS09035 NADH-quinone oxidoreductase subunit L low > 56
Bacteroides thetaiotaomicron VPI-5482 0.33 BT3924 ATP-dependent DNA helicase recG (NCBI ptt file) 0.23 BT4060 NADH dehydrogenase I, chain L (NCBI ptt file) — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_1510 DEAD/DEAH box helicase domain protein (RefSeq) 0.28 Dshi_1327 proton-translocating NADH-quinone oxidoreductase, chain L (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.32 Ga0059261_0958 ATP-dependent DNA helicase RecG (EC 3.6.1.-) 0.26 Ga0059261_0698 NADH dehydrogenase subunit L (EC 1.6.5.3) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.32 CA264_15020 DNA helicase RecG 0.45 CA264_04220 NADH-quinone oxidoreductase subunit L low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.32 CA265_RS22835 ATP-dependent DNA helicase RecG 0.32 CA265_RS23590 NADH-quinone oxidoreductase subunit L — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.31 ABZR88_RS17240 ATP-dependent DNA helicase RecG 0.31 ABZR88_RS17115 NADH-quinone oxidoreductase subunit L — —
Bosea sp. OAE506 0.30 ABIE41_RS15815 ATP-dependent DNA helicase RecG 0.25 ABIE41_RS17885 NADH-quinone oxidoreductase subunit L — —
Rhodospirillum rubrum S1H 0.28 Rru_A1728 ATP-dependent DNA helicase RecG (NCBI) 0.28 Rru_A1566 NADH-plastoquinone oxidoreductase, chain 5 (NCBI) — —
Mycobacterium tuberculosis H37Rv 0.25 Rv2973c Probable ATP-dependent DNA helicase RecG 0.25 Rv3156 Probable NADH dehydrogenase I (chain L) NuoL (NADH-ubiquinone oxidoreductase chain L) 0.41 6

Not shown: 39 genomes with orthologs for PP_5310 only; 1 genomes with orthologs for PP_4129 only