Conservation of cofitness between PP_4402 and PP_4064 in Pseudomonas putida KT2440

38 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4402 branched-chain alpha-keto acid dehydrogenase complex, beta subunit 1.0 PP_4064 isovaleryl-CoA dehydrogenase 0.49 5
Pseudomonas sp. BP01 1.00 JOY50_RS00850 alpha-ketoacid dehydrogenase subunit beta 0.99 JOY50_RS06790 isovaleryl-CoA dehydrogenase low > 84
Pseudomonas sp. SVBP6 0.95 COO64_RS21460 alpha-ketoacid dehydrogenase subunit beta 0.96 COO64_RS24755 isovaleryl-CoA dehydrogenase low > 93
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_22985 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.95 AO356_01580 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.64 7
Pseudomonas sp. DMC3 0.92 GFF1607 2-oxoisovalerate dehydrogenase subunit beta 0.95 GFF1474 Acyl-CoA dehydrogenase low > 89
Pseudomonas fluorescens FW300-N2E2 0.92 Pf6N2E2_480 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) (EC 1.2.4.4) (from data) 0.95 Pf6N2E2_2191 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.68 4
Pseudomonas fluorescens FW300-N2E3 0.92 AO353_26640 2-oxoisovalerate dehydrogenase 0.95 AO353_20350 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.56 7
Pseudomonas sp. RS175 0.91 PFR28_02446 2-oxoisovalerate dehydrogenase subunit beta 0.95 PFR28_01260 Acyl-CoA dehydrogenase 0.67 11
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_4479 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) 0.94 Pf1N1B4_3987 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.34 22
Pseudomonas simiae WCS417 0.91 PS417_17550 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.95 PS417_17015 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.36 8
Pseudomonas aeruginosa PA14 0.90 IKLFDK_11030 2-oxoisovalerate dehydrogenase subunit beta 0.88 IKLFDK_09850 isovaleryl-CoA dehydrogenase low > 101
Pseudomonas fluorescens SBW25 0.90 PFLU_RS19360 alpha-ketoacid dehydrogenase subunit beta 0.94 PFLU_RS18965 isovaleryl-CoA dehydrogenase 0.55 99
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_3541 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.95 PfGW456L13_2591 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.71 20
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS19360 alpha-ketoacid dehydrogenase subunit beta 0.94 PFLU_RS18965 isovaleryl-CoA dehydrogenase 0.43 19
Variovorax sp. OAS795 0.84 ABID97_RS06675 alpha-ketoacid dehydrogenase subunit beta 0.71 ABID97_RS25140 isovaleryl-CoA dehydrogenase low > 91
Castellaniella sp019104865 MT123 0.83 ABCV34_RS04970 alpha-ketoacid dehydrogenase subunit beta 0.69 ABCV34_RS12370 isovaleryl-CoA dehydrogenase 0.98 6
Agrobacterium fabrum C58 0.78 Atu3472 2-oxoisovalerate dehydrogenase subunit beta 0.67 Atu3477 acyl-CoA dehydrogenase 0.18 31
Sinorhizobium meliloti 1021 0.76 SMc03202 branched-chain alpha-ketoacid dehydrogenase, E1 component beta subunit (EC 1.2.4.4) (from data) 0.70 SM_b21121 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.85 2
Bosea sp. OAE506 0.76 ABIE41_RS02480 alpha-ketoacid dehydrogenase subunit beta 0.71 ABIE41_RS14775 isovaleryl-CoA dehydrogenase low > 77
Sphingomonas koreensis DSMZ 15582 0.74 Ga0059261_2272 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 0.62 Ga0059261_4052 Acyl-CoA dehydrogenases 0.53 5
Brevundimonas sp. GW460-12-10-14-LB2 0.69 A4249_RS13195 alpha-ketoacid dehydrogenase subunit beta 0.63 A4249_RS07370 isovaleryl-CoA dehydrogenase low > 48
Alteromonas macleodii MIT1002 0.46 MIT1002_02013 2-oxoisovalerate dehydrogenase subunit beta 0.78 MIT1002_01669 Acyl-CoA dehydrogenase low > 70
Shewanella loihica PV-4 0.46 Shew_1926 transketolase, central region (RefSeq) 0.80 Shew_2570 acyl-CoA dehydrogenase domain-containing protein (RefSeq) low > 60
Shewanella amazonensis SB2B 0.46 Sama_1710 alpha keto acid dehydrogenase complex, E1 component, beta subunit (RefSeq) 0.79 Sama_1362 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) low > 62
Shewanella sp. ANA-3 0.46 Shewana3_2130 transketolase, central region (RefSeq) 0.80 Shewana3_1672 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) (from data) 0.40 31
Shewanella oneidensis MR-1 0.45 SO2340 alpha keto acid dehydrogenase complex, E1 component, beta subunit (NCBI ptt file) 0.80 SO1897 ivd isovaleryl-CoA dehydrogenase (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.42 ABIE51_RS04040 alpha-ketoacid dehydrogenase subunit beta 0.62 ABIE51_RS13125 isovaleryl-CoA dehydrogenase low > 62
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS18445 alpha-ketoacid dehydrogenase subunit beta 0.64 ABZR86_RS20555 isovaleryl-CoA dehydrogenase
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00750 acoB alpha-ketoacid dehydrogenase subunit beta 0.65 OKGIIK_04045 caiA acyl-CoA dehydrogenase
Kangiella aquimarina DSM 16071 0.40 B158DRAFT_1476 Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit 0.75 B158DRAFT_2512 Acyl-CoA dehydrogenases
Rhodanobacter denitrificans MT42 0.40 LRK55_RS05635 alpha-ketoacid dehydrogenase subunit beta 0.64 LRK55_RS14990 isovaleryl-CoA dehydrogenase
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS05880 alpha-ketoacid dehydrogenase subunit beta 0.65 LRK54_RS15275 isovaleryl-CoA dehydrogenase
Ralstonia solanacearum PSI07 0.40 RPSI07_RS16525 alpha-ketoacid dehydrogenase subunit beta 0.73 RPSI07_RS22785 isovaleryl-CoA dehydrogenase low > 81
Ralstonia solanacearum IBSBF1503 0.40 RALBFv3_RS00945 alpha-ketoacid dehydrogenase subunit beta 0.72 RALBFv3_RS10530 isovaleryl-CoA dehydrogenase low > 76
Ralstonia solanacearum UW163 0.40 UW163_RS14255 alpha-ketoacid dehydrogenase subunit beta 0.72 UW163_RS03050 isovaleryl-CoA dehydrogenase
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.570.1 Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit (EC 1.2.4.4) 0.73 Xcc-8004.321.1 Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) 0.57 15
Rhodanobacter sp000427505 FW510-R12 0.39 LRK53_RS17290 alpha-ketoacid dehydrogenase subunit beta 0.65 LRK53_RS13365 isovaleryl-CoA dehydrogenase
Ralstonia solanacearum GMI1000 0.38 RS_RS09075 alpha-ketoacid dehydrogenase subunit beta 0.73 RS_RS01370 isovaleryl-CoA dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS33050 2-oxoisovalerate dehydrogenase 0.72 RR42_RS26910 isovaleryl-CoA dehydrogenase

Not shown: 1 genomes with orthologs for PP_4402 only; 27 genomes with orthologs for PP_4064 only