Conservation of cofitness between PP_1985 and PP_2001 in Pseudomonas putida KT2440

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1985 3-isopropylmalate dehydratase large subunit 1.0 PP_2001 O-succinylhomoserine sulfhydrylase 0.88 15
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_3948 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.86 PfGW456L13_3934 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.97 4
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_63 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.86 Pf6N2E2_77 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.85 8
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_20620 isopropylmalate isomerase 0.86 AO353_20695 O-succinylhomoserine sulfhydrylase 0.95 7
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_21400 isopropylmalate isomerase 0.86 AO356_21470 O-succinylhomoserine sulfhydrylase 0.95 5
Pseudomonas sp. RS175 0.89 PFR28_02824 3-isopropylmalate dehydratase large subunit 0.87 PFR28_02810 O-succinylhomoserine sulfhydrylase 0.49 29
Pseudomonas simiae WCS417 0.89 PS417_18600 isopropylmalate isomerase 0.88 PS417_18530 O-succinylhomoserine sulfhydrylase 0.90 10
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.87 PFLU_RS20510 O-succinylhomoserine sulfhydrylase 0.88 6
Pseudomonas fluorescens SBW25 0.89 PFLU_RS20580 3-isopropylmalate dehydratase large subunit 0.87 PFLU_RS20510 O-succinylhomoserine sulfhydrylase 0.83 6
Pseudomonas stutzeri RCH2 0.88 Psest_2591 3-isopropylmalate dehydratase, large subunit 0.81 Psest_2578 O-succinylhomoserine sulfhydrylase 0.94 2
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.90 Psyr_1669 O-succinylhomoserine sulfhydrylase 0.94 3
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_1983 3-isopropylmalate dehydratase, large subunit 0.90 Psyr_1669 O-succinylhomoserine sulfhydrylase 0.96 2
Pseudomonas sp. S08-1 0.86 OH686_04480 3-isopropylmalate dehydratase large subunit 0.81 OH686_04415 O-succinylhomoserine sulfhydrylase 0.74 26
Marinobacter adhaerens HP15 0.78 HP15_1834 protein containing 3-isopropylmalate dehydratase, large subunit region domain 0.61 HP15_1820 methionine gamma-lyase 0.91 10
Acinetobacter radioresistens SK82 0.72 MPMX26_00345 3-isopropylmalate dehydratase large subunit 0.64 MPMX26_01645 O-succinylhomoserine sulfhydrylase 0.90 27
Cupriavidus basilensis FW507-4G11 0.72 RR42_RS14400 isopropylmalate isomerase 0.53 RR42_RS14320 O-succinylhomoserine sulfhydrylase 0.82 12
Paraburkholderia bryophila 376MFSha3.1 0.71 H281DRAFT_06075 3-isopropylmalate dehydratase, large subunit 0.52 H281DRAFT_06059 O-succinylhomoserine sulfhydrylase 0.71 6
Paraburkholderia sabiae LMG 24235 0.71 QEN71_RS17605 3-isopropylmalate dehydratase large subunit 0.52 QEN71_RS17685 O-succinylhomoserine sulfhydrylase low > 153
Burkholderia phytofirmans PsJN 0.71 BPHYT_RS33915 isopropylmalate isomerase 0.52 BPHYT_RS33835 O-succinylhomoserine sulfhydrylase 0.94 3
Paraburkholderia graminis OAS925 0.71 ABIE53_004801 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit 0.53 ABIE53_004817 O-succinylhomoserine sulfhydrylase 0.95 3
Variovorax sp. OAS795 0.69 ABID97_RS08465 3-isopropylmalate dehydratase large subunit 0.54 ABID97_RS21630 O-succinylhomoserine sulfhydrylase — —
Variovorax sp. SCN45 0.68 GFF3890 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.53 GFF3088 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.67 GFF3363 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33) 0.52 GFF301 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.77 19
Azospirillum brasilense Sp245 0.66 AZOBR_RS03545 isopropylmalate isomerase 0.42 AZOBR_RS02140 O-succinylhomoserine sulfhydrylase 0.92 2
Azospirillum sp. SherDot2 0.66 MPMX19_01998 3-isopropylmalate dehydratase large subunit 0.41 MPMX19_01364 O-succinylhomoserine sulfhydrylase 0.90 6
Rhodospirillum rubrum S1H 0.66 Rru_A1189 3-isopropylmalate dehydratase large subunit region (NCBI) 0.42 Rru_A3214 O-succinylhomoserine sulfhydrylase (NCBI) 0.84 27
Dechlorosoma suillum PS 0.66 Dsui_3201 3-isopropylmalate dehydratase, large subunit 0.55 Dsui_3185 O-succinylhomoserine sulfhydrylase — —
Sinorhizobium meliloti 1021 0.65 SMc03823 isopropylmalate isomerase large subunit 0.42 SMc02217 O-succinylhomoserine sulfhydrylase 0.97 7
Agrobacterium fabrum C58 0.64 Atu2709 3-isopropylmalate dehydratase, large subunit 0.43 Atu0432 O-succinylhomoserine sulfhydrylase 0.97 6
Rhizobium sp. OAE497 0.63 ABIE40_RS18380 3-isopropylmalate dehydratase large subunit 0.42 ABIE40_RS02340 O-succinylhomoserine sulfhydrylase 0.99 4
Bosea sp. OAE506 0.63 ABIE41_RS11660 3-isopropylmalate dehydratase large subunit 0.43 ABIE41_RS03970 O-succinylhomoserine sulfhydrylase — —
Magnetospirillum magneticum AMB-1 0.63 AMB_RS20560 3-isopropylmalate dehydratase large subunit 0.46 AMB_RS21365 O-succinylhomoserine sulfhydrylase — —
Rhodopseudomonas palustris CGA009 0.62 TX73_001245 3-isopropylmalate dehydratase large subunit 0.43 TX73_024775 O-succinylhomoserine sulfhydrylase — —
Caulobacter crescentus NA1000 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.43 CCNA_02321 O-succinylhomoserine sulfhydrylase 0.92 27
Caulobacter crescentus NA1000 Δfur 0.61 CCNA_00196 3-isopropylmalate dehydratase large subunit 0.43 CCNA_02321 O-succinylhomoserine sulfhydrylase low > 67
Phaeobacter inhibens DSM 17395 0.59 PGA1_c29780 3-isopropylmalate dehydratase large subunit 0.42 PGA1_c23540 O-succinylhomoserine sulfhydrylase MetZ 0.85 26
Dinoroseobacter shibae DFL-12 0.59 Dshi_0085 3-isopropylmalate dehydratase, large subunit (RefSeq) 0.46 Dshi_2410 O-succinylhomoserine sulfhydrylase (RefSeq) — —
Sphingomonas koreensis DSMZ 15582 0.58 Ga0059261_4223 3-isopropylmalate dehydratase, large subunit 0.41 Ga0059261_3194 O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) 0.89 56
Mycobacterium tuberculosis H37Rv 0.56 Rv2988c Probable 3-isopropylmalate dehydratase (large subunit) LeuC (isopropylmalate isomerase) (alpha-IPM isomerase) (IPMI) 0.42 Rv0391 Probable O-succinylhomoserine sulfhydrylase MetZ (OSH sulfhydrylase) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_09435 3-isopropylmalate dehydratase large subunit 0.45 CA264_02530 O-succinylhomoserine sulfhydrylase low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.51 CA265_RS15830 3-isopropylmalate dehydratase large subunit 0.47 CA265_RS13080 O-succinylhomoserine sulfhydrylase 0.93 15
Echinicola vietnamensis KMM 6221, DSM 17526 0.49 Echvi_2059 3-isopropylmalate dehydratase, large subunit 0.47 Echvi_2283 Cystathionine beta-lyases/cystathionine gamma-synthases 0.72 18

Not shown: 61 genomes with orthologs for PP_1985 only; 0 genomes with orthologs for PP_2001 only