Conservation of cofitness between PP_0422 and PP_2001 in Pseudomonas putida KT2440

41 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0422 Indole-3-glycerol phosphate synthase 1.0 PP_2001 O-succinylhomoserine sulfhydrylase 0.90 7
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_4826 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.86 Pf6N2E2_77 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.94 10
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_1222 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.86 PfGW456L13_3934 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.86 14
Pseudomonas fluorescens FW300-N2C3 0.87 AO356_14440 indole-3-glycerol-phosphate synthase 0.86 AO356_21470 O-succinylhomoserine sulfhydrylase 0.93 9
Pseudomonas sp. RS175 0.87 PFR28_04043 Indole-3-glycerol phosphate synthase 0.87 PFR28_02810 O-succinylhomoserine sulfhydrylase — —
Pseudomonas simiae WCS417 0.86 PS417_25710 indole-3-glycerol-phosphate synthase 0.88 PS417_18530 O-succinylhomoserine sulfhydrylase 0.81 10
Pseudomonas fluorescens FW300-N2E3 0.86 AO353_07210 indole-3-glycerol-phosphate synthase 0.86 AO353_20695 O-succinylhomoserine sulfhydrylase 0.90 13
Pseudomonas fluorescens SBW25 0.84 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC 0.87 PFLU_RS20510 O-succinylhomoserine sulfhydrylase 0.78 3
Pseudomonas fluorescens SBW25-INTG 0.84 PFLU_RS27365 indole-3-glycerol phosphate synthase TrpC 0.87 PFLU_RS20510 O-succinylhomoserine sulfhydrylase 0.83 13
Pseudomonas syringae pv. syringae B728a 0.82 Psyr_4579 indole-3-glycerol phosphate synthase 0.90 Psyr_1669 O-succinylhomoserine sulfhydrylase 0.29 83
Pseudomonas syringae pv. syringae B728a ΔmexB 0.82 Psyr_4579 indole-3-glycerol phosphate synthase 0.90 Psyr_1669 O-succinylhomoserine sulfhydrylase low > 86
Pseudomonas sp. S08-1 0.81 OH686_15140 Indole-3-glycerol phosphate synthase 0.81 OH686_04415 O-succinylhomoserine sulfhydrylase 0.83 16
Pseudomonas stutzeri RCH2 0.77 Psest_3647 Indole-3-glycerol phosphate synthase 0.81 Psest_2578 O-succinylhomoserine sulfhydrylase 0.81 8
Marinobacter adhaerens HP15 0.62 HP15_3291 indole-3-glycerol phosphate synthase 0.61 HP15_1820 methionine gamma-lyase 0.74 17
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS27565 indole-3-glycerol phosphate synthase TrpC 0.52 QEN71_RS17685 O-succinylhomoserine sulfhydrylase low > 153
Cupriavidus basilensis FW507-4G11 0.51 RR42_RS18310 indole-3-glycerol-phosphate synthase 0.53 RR42_RS14320 O-succinylhomoserine sulfhydrylase 0.24 121
Burkholderia phytofirmans PsJN 0.51 BPHYT_RS17405 indole-3-glycerol phosphate synthase 0.52 BPHYT_RS33835 O-succinylhomoserine sulfhydrylase 0.84 10
Dechlorosoma suillum PS 0.51 Dsui_0168 Indole-3-glycerol phosphate synthase 0.55 Dsui_3185 O-succinylhomoserine sulfhydrylase — —
Variovorax sp. OAS795 0.50 ABID97_RS05280 indole-3-glycerol phosphate synthase TrpC 0.54 ABID97_RS21630 O-succinylhomoserine sulfhydrylase — —
Paraburkholderia graminis OAS925 0.50 ABIE53_003643 indole-3-glycerol phosphate synthase 0.53 ABIE53_004817 O-succinylhomoserine sulfhydrylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF3111 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.52 GFF301 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) 0.86 12
Paraburkholderia bryophila 376MFSha3.1 0.50 H281DRAFT_05712 indole-3-glycerol phosphate synthase 0.52 H281DRAFT_06059 O-succinylhomoserine sulfhydrylase 0.78 5
Acinetobacter radioresistens SK82 0.49 MPMX26_00983 Indole-3-glycerol phosphate synthase 0.64 MPMX26_01645 O-succinylhomoserine sulfhydrylase 0.93 24
Variovorax sp. SCN45 0.48 GFF5890 Indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.53 GFF3088 O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) @ O-succinylhomoserine sulfhydrylase (EC 2.5.1.48) — —
Rhizobium sp. OAE497 0.45 ABIE40_RS09550 indole-3-glycerol phosphate synthase TrpC 0.42 ABIE40_RS02340 O-succinylhomoserine sulfhydrylase — —
Phaeobacter inhibens DSM 17395 0.45 PGA1_c16910 indole-3-glycerol phosphate synthase TrpC 0.42 PGA1_c23540 O-succinylhomoserine sulfhydrylase MetZ — —
Rhodospirillum rubrum S1H 0.45 Rru_A1897 Indole-3-glycerol-phosphate synthase (NCBI) 0.42 Rru_A3214 O-succinylhomoserine sulfhydrylase (NCBI) 0.84 24
Azospirillum sp. SherDot2 0.44 MPMX19_01014 Indole-3-glycerol phosphate synthase 0.41 MPMX19_01364 O-succinylhomoserine sulfhydrylase 0.69 32
Sphingomonas koreensis DSMZ 15582 0.44 Ga0059261_0930 indole-3-glycerol phosphate synthase (EC 4.1.1.48) 0.41 Ga0059261_3194 O-acetylhomoserine sulfhydrylase (EC:2.5.1.49) (from data) 0.87 56
Magnetospirillum magneticum AMB-1 0.44 AMB_RS14415 indole-3-glycerol phosphate synthase TrpC 0.46 AMB_RS21365 O-succinylhomoserine sulfhydrylase — —
Rhodopseudomonas palustris CGA009 0.44 TX73_014985 indole-3-glycerol phosphate synthase TrpC 0.43 TX73_024775 O-succinylhomoserine sulfhydrylase — —
Dinoroseobacter shibae DFL-12 0.44 Dshi_1800 Indole-3-glycerol-phosphate synthase (RefSeq) 0.46 Dshi_2410 O-succinylhomoserine sulfhydrylase (RefSeq) — —
Azospirillum brasilense Sp245 0.42 AZOBR_RS07450 indole-3-glycerol-phosphate synthase 0.42 AZOBR_RS02140 O-succinylhomoserine sulfhydrylase 0.89 11
Caulobacter crescentus NA1000 0.42 CCNA_01976 Indole-3-glycerol phosphate synthase 0.43 CCNA_02321 O-succinylhomoserine sulfhydrylase 0.84 47
Caulobacter crescentus NA1000 Δfur 0.42 CCNA_01976 Indole-3-glycerol phosphate synthase 0.43 CCNA_02321 O-succinylhomoserine sulfhydrylase low > 67
Bosea sp. OAE506 0.41 ABIE41_RS17425 indole-3-glycerol phosphate synthase TrpC 0.43 ABIE41_RS03970 O-succinylhomoserine sulfhydrylase — —
Agrobacterium fabrum C58 0.41 Atu1688 indole-3-glycerol-phosphate synthase 0.43 Atu0432 O-succinylhomoserine sulfhydrylase 0.87 8
Sinorhizobium meliloti 1021 0.40 SMc00236 Indole-3-glycerol phosphate synthase 0.42 SMc02217 O-succinylhomoserine sulfhydrylase 0.72 54
Pedobacter sp. GW460-11-11-14-LB5 0.36 CA265_RS22900 indole-3-glycerol phosphate synthase 0.47 CA265_RS13080 O-succinylhomoserine sulfhydrylase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.34 Echvi_2508 Indole-3-glycerol phosphate synthase 0.47 Echvi_2283 Cystathionine beta-lyases/cystathionine gamma-synthases — —
Mycobacterium tuberculosis H37Rv 0.28 Rv1611 Probable indole-3-glycerol phosphate synthase TrpC 0.42 Rv0391 Probable O-succinylhomoserine sulfhydrylase MetZ (OSH sulfhydrylase) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.23 CA264_05070 indole-3-glycerol phosphate synthase 0.45 CA264_02530 O-succinylhomoserine sulfhydrylase low > 74

Not shown: 24 genomes with orthologs for PP_0422 only; 0 genomes with orthologs for PP_2001 only