Conservation of cofitness between PP_5338 and PP_1994 in Pseudomonas putida KT2440

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5338 aspartate ammonia-lyase 1.0 PP_1994 tRNA pseudouridine (38-40)synthase 0.34 14
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4085 Aspartate ammonia-lyase (EC 4.3.1.1) 0.78 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_11090 aspartate ammonia-lyase 0.76 AO356_21435 pseudouridine synthase low > 104
Pseudomonas sp. RS175 0.93 PFR28_04498 Aspartate ammonia-lyase 0.78 PFR28_02817 tRNA pseudouridine synthase A low > 88
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_2025 Aspartate ammonia-lyase (EC 4.3.1.1) 0.78 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) — —
Pseudomonas simiae WCS417 0.93 PS417_28130 aspartate ammonia-lyase 0.76 PS417_18565 pseudouridine synthase — —
Pseudomonas fluorescens SBW25 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS29815 aspartate ammonia-lyase 0.76 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA low > 109
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_09950 aspartate ammonia-lyase 0.77 AO353_20660 pseudouridine synthase low > 101
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_742 Aspartate ammonia-lyase (EC 4.3.1.1) 0.79 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.32 21
Pseudomonas syringae pv. syringae B728a ΔmexB 0.92 Psyr_5051 Aspartate ammonia-lyase 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.92 Psyr_5051 Aspartate ammonia-lyase 0.78 Psyr_1662 tRNA pseudouridine synthase low > 86
Pseudomonas sp. S08-1 0.88 OH686_13315 Aspartate ammonia-lyase 0.71 OH686_04450 tRNA pseudouridine(38-40) synthase — —
Pseudomonas stutzeri RCH2 0.84 Psest_4074 Aspartate ammonia-lyase 0.70 Psest_2585 pseudouridylate synthase I — —
Cupriavidus basilensis FW507-4G11 0.59 RR42_RS26135 aspartate ammonia-lyase 0.38 RR42_RS14370 tRNA pseudouridine synthase A — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.59 CA264_18450 aspartate ammonia-lyase 0.25 CA264_17725 tRNA pseudouridine synthase A low > 74
Shewanella amazonensis SB2B 0.58 Sama_0789 aspartate ammonia-lyase (RefSeq) 0.53 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) low > 62
Azospirillum sp. SherDot2 0.57 MPMX19_03594 Aspartate ammonia-lyase 0.31 MPMX19_02005 tRNA pseudouridine synthase A — —
Dechlorosoma suillum PS 0.56 Dsui_3481 aspartate ammonia-lyase 0.46 Dsui_3194 pseudouridylate synthase I low > 51
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS33820 aspartate ammonia-lyase 0.47 QEN71_RS17635 tRNA pseudouridine(38-40) synthase TruA low > 153
Phocaeicola vulgatus CL09T03C04 0.55 HMPREF1058_RS06295 aspartate ammonia-lyase 0.23 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA low > 67
Phocaeicola dorei CL03T12C01 0.55 ABI39_RS20055 aspartate ammonia-lyase 0.23 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA low > 72
Bacteroides ovatus ATCC 8483 0.54 BACOVA_01069 aspartate ammonia-lyase 0.25 BACOVA_05075 tRNA pseudouridine synthase A low > 94
Bacteroides thetaiotaomicron VPI-5482 0.54 BT2755 aspartate ammonia-lyase (NCBI ptt file) 0.25 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) low > 81
Desulfovibrio vulgaris Hildenborough JW710 0.54 DVU1871 aspA aspartate ammonia-lyase (TIGR) 0.21 DVU0911 truA tRNA pseudouridine synthase A (TIGR) low > 55
Bacteroides stercoris CC31F 0.54 HMPREF1181_RS11250 aspartate ammonia-lyase 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA low > 56
Agrobacterium fabrum C58 0.53 Atu3793 aspartate ammonia-lyase 0.29 Atu0368 tRNA pseudouridine synthase I low > 89
Rahnella sp. WP5 0.53 EX31_RS08965 aspartate ammonia-lyase 0.53 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA low > 89
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_13620 aspartate ammonia-lyase 0.52 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA low > 62
Desulfovibrio vulgaris Miyazaki F 0.53 DvMF_0565 aspA aspartate ammonia-lyase (RefSeq) 0.19 DvMF_1395 truA tRNA pseudouridine synthase A (RefSeq) low > 51
Variovorax sp. SCN45 0.52 GFF4594 Aspartate ammonia-lyase (EC 4.3.1.1) 0.40 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) low > 127
Escherichia coli BW25113 0.52 b4139 aspA aspartate ammonia-lyase (aspartase) (VIMSS) 0.53 b2318 truA tRNA pseudouridine synthase A (NCBI) low > 76
Escherichia coli Nissle 1917 0.52 ECOLIN_RS24045 aspartate ammonia-lyase 0.53 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA low > 52
Escherichia coli ECRC102 0.52 NIAGMN_10275 aspA aspartate ammonia-lyase 0.53 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli BL21 0.52 ECD_04009 aspartate ammonia-lyase 0.53 ECD_02243 tRNA pseudouridine(38-40) synthase — —
Escherichia coli ECRC101 0.52 MCAODC_02940 aspA aspartate ammonia-lyase 0.53 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECOR38 0.52 HEPCGN_10655 aspA aspartate ammonia-lyase 0.53 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase low > 85
Escherichia coli ECOR27 0.52 NOLOHH_04695 aspA aspartate ammonia-lyase 0.53 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA low > 57
Escherichia coli ECRC98 0.52 JDDGAC_16065 aspA aspartate ammonia-lyase 0.53 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli ECRC62 0.52 BNILDI_06795 aspA aspartate ammonia-lyase 0.53 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA — —
Escherichia coli ECRC101 0.52 OKFHMN_12430 aspA aspartate ammonia-lyase 0.53 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.52 OHPLBJKB_03904 Aspartate ammonia-lyase 0.53 OHPLBJKB_01387 tRNA pseudouridine synthase A low > 73
Escherichia fergusonii Becca 0.52 EFB2_04396 Aspartate ammonia-lyase 0.53 EFB2_01540 tRNA pseudouridine synthase A low > 86
Escherichia coli ECRC99 0.52 KEDOAH_15735 aspA aspartate ammonia-lyase 0.53 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase — —
Variovorax sp. OAS795 0.52 ABID97_RS05930 aspartate ammonia-lyase 0.39 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA low > 91
Serratia liquefaciens MT49 0.52 IAI46_01480 aspartate ammonia-lyase 0.53 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA low > 86
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3336 aspartate ammonia-lyase 0.54 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase low > 76
Pectobacterium carotovorum WPP14 0.52 HER17_RS18835 aspartate ammonia-lyase 0.54 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.52 GFF2013 Aspartate ammonia-lyase (EC 4.3.1.1) 0.54 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) low > 78
Klebsiella michiganensis M5al 0.52 BWI76_RS02330 aspartate ammonia-lyase 0.54 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA low > 92
Enterobacter sp. TBS_079 0.52 MPMX20_00419 Aspartate ammonia-lyase 0.54 MPMX20_03253 tRNA pseudouridine synthase A low > 85
Dickeya dianthicola ME23 0.51 DZA65_RS02850 aspartate ammonia-lyase 0.51 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA low > 75
Dickeya dianthicola 67-19 0.51 HGI48_RS02695 aspartate ammonia-lyase 0.51 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA low > 71
Pantoea sp. MT58 0.51 IAI47_17320 aspartate ammonia-lyase 0.50 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.28 69
Acinetobacter radioresistens SK82 0.51 MPMX26_01469 Aspartate ammonia-lyase 0.50 MPMX26_00352 tRNA pseudouridine synthase A low > 36
Dickeya dadantii 3937 0.51 DDA3937_RS02720 aspartate ammonia-lyase 0.51 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA low > 74
Castellaniella sp019104865 MT123 0.46 ABCV34_RS07730 aspartate ammonia-lyase 0.41 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA low > 48
Bifidobacterium breve UCC2003 0.44 BBR_RS12120 aspartate ammonia-lyase 0.16 BBR_RS18795 tRNA pseudouridine(38-40) synthase TruA low > 34

Not shown: 0 genomes with orthologs for PP_5338 only; 43 genomes with orthologs for PP_1994 only