Conservation of cofitness between PP_5146 and PP_1871 in Pseudomonas putida KT2440

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5146 RNA pyrophosphohydrolase 1.0 PP_1871 Protease HtpX 0.44 6
Pseudomonas simiae WCS417 0.99 PS417_26990 RNA pyrophosphohydrolase 0.89 PS417_08555 protease HtpX — —
Pseudomonas fluorescens SBW25 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.89 PFLU_RS08505 protease HtpX low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.89 PFLU_RS08505 protease HtpX 0.43 43
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_952 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.92 PfGW456L13_2250 Probable protease htpX homolog (EC 3.4.24.-) 0.29 69
Pseudomonas sp. RS175 0.98 PFR28_04831 RNA pyrophosphohydrolase 0.93 PFR28_00983 Protease HtpX 0.35 18
Pseudomonas syringae pv. syringae B728a ΔmexB 0.98 Psyr_4843 NUDIX hydrolase 0.91 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B low > 86
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.92 Pf1N1B4_262 Probable protease htpX homolog (EC 3.4.24.-) low > 87
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_08470 RNA pyrophosphohydrolase 0.92 AO353_19145 protease HtpX 0.42 8
Pseudomonas syringae pv. syringae B728a 0.98 Psyr_4843 NUDIX hydrolase 0.91 Psyr_3616 Heat shock protein, Metallo peptidase, MEROPS family M48B low > 86
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3941 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.93 Pf6N2E2_2447 Probable protease htpX homolog (EC 3.4.24.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_10345 RNA pyrophosphohydrolase 0.93 AO356_03095 protease HtpX low > 104
Pseudomonas sp. S08-1 0.92 OH686_11425 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase 0.82 OH686_22565 Protease HtpX low > 80
Pseudomonas stutzeri RCH2 0.92 Psest_3863 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.86 Psest_1770 Zn-dependent protease with chaperone function — —
Acinetobacter radioresistens SK82 0.71 MPMX26_00342 RNA pyrophosphohydrolase 0.64 MPMX26_00808 Protease HtpX — —
Escherichia coli Nissle 1917 0.70 ECOLIN_RS15880 RNA pyrophosphohydrolase 0.45 ECOLIN_RS10185 protease HtpX — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase 0.45 OHPLBJKB_01902 Protease HtpX — —
Escherichia coli BL21 0.70 ECD_02678 RNA pyrophosphohydrolase 0.45 ECD_01800 putative endopeptidase — —
Escherichia coli BW25113 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) 0.45 b1829 htpX heat shock protein HtpX (NCBI) low > 76
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.46 EX28DRAFT_0727 Zn-dependent protease with chaperone function — —
Escherichia fergusonii Becca 0.70 EFB2_01054 RNA pyrophosphohydrolase 0.45 EFB2_02172 Protease HtpX — —
Dickeya dianthicola ME23 0.70 DZA65_RS05295 RNA pyrophosphohydrolase 0.46 DZA65_RS11840 protease HtpX low > 75
Dickeya dianthicola 67-19 0.69 HGI48_RS04955 RNA pyrophosphohydrolase 0.46 HGI48_RS11505 protease HtpX — —
Escherichia coli ECRC62 0.69 BNILDI_10365 rppH RNA pyrophosphohydrolase 0.45 BNILDI_15775 htpX protease HtpX — —
Escherichia coli ECRC99 0.69 KEDOAH_08130 rppH RNA pyrophosphohydrolase 0.45 KEDOAH_01635 htpX protease HtpX — —
Escherichia coli ECOR38 0.69 HEPCGN_19255 rppH RNA pyrophosphohydrolase 0.45 HEPCGN_04870 htpX protease HtpX — —
Escherichia coli ECRC101 0.69 OKFHMN_20000 rppH RNA pyrophosphohydrolase 0.45 OKFHMN_26470 htpX protease HtpX — —
Escherichia coli ECRC102 0.69 NIAGMN_17770 rppH RNA pyrophosphohydrolase 0.45 NIAGMN_01590 htpX protease HtpX — —
Escherichia coli ECOR27 0.69 NOLOHH_11885 rppH RNA pyrophosphohydrolase 0.45 NOLOHH_16980 htpX protease HtpX — —
Escherichia coli ECRC98 0.69 JDDGAC_23665 rppH RNA pyrophosphohydrolase 0.45 JDDGAC_01045 htpX protease HtpX — —
Escherichia coli ECRC101 0.69 MCAODC_10525 rppH RNA pyrophosphohydrolase 0.45 MCAODC_18935 htpX protease HtpX — —
Dickeya dadantii 3937 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase 0.46 DDA3937_RS11460 protease HtpX low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 0.46 GFF2844 Probable protease HtpX (EC 3.4.24.-) — —
Erwinia tracheiphila SCR3 0.69 LU632_RS06105 rppH RNA pyrophosphohydrolase 0.42 LU632_RS13240 htpX protease HtpX — —
Pantoea sp. MT58 0.69 IAI47_03915 RNA pyrophosphohydrolase 0.45 IAI47_08710 protease HtpX low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS23275 RNA pyrophosphohydrolase 0.45 BWI76_RS17970 zinc metalloprotease HtpX — —
Pectobacterium carotovorum WPP14 0.69 HER17_RS16585 RNA pyrophosphohydrolase 0.45 HER17_RS11545 protease HtpX — —
Serratia liquefaciens MT49 0.69 IAI46_20455 RNA pyrophosphohydrolase 0.46 IAI46_10810 protease HtpX — —
Rahnella sp. WP5 0.68 EX31_RS13205 RNA pyrophosphohydrolase 0.45 EX31_RS24885 protease HtpX — —
Shewanella amazonensis SB2B 0.67 Sama_0863 dinucleoside polyphosphate hydrolase (RefSeq) 0.51 Sama_1443 heat shock protein HtpX (RefSeq) — —
Shewanella loihica PV-4 0.67 Shew_1038 dinucleoside polyphosphate hydrolase (RefSeq) 0.51 Shew_1723 heat shock protein HtpX (RefSeq) — —
Shewanella oneidensis MR-1 0.66 SO1331 MutT/nudix family protein (NCBI ptt file) 0.50 SO2728 htpX peptidase HtpX (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.66 Shewana3_3043 dinucleoside polyphosphate hydrolase (RefSeq) 0.51 Shewana3_2512 heat shock protein HtpX (RefSeq) — —
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS09330 RNA pyrophosphohydrolase 0.50 LRK54_RS14825 protease HtpX 0.50 47
Rhodanobacter denitrificans MT42 0.65 LRK55_RS08860 RNA pyrophosphohydrolase 0.49 LRK55_RS14540 protease HtpX low > 63
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS13805 RNA pyrophosphohydrolase 0.50 ABZR86_RS00580 protease HtpX low > 74
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_15860 RNA pyrophosphohydrolase 0.48 OKGIIK_03645 htpX protease HtpX low > 52
Enterobacter sp. TBS_079 0.60 MPMX20_03693 RNA pyrophosphohydrolase 0.45 MPMX20_02736 Protease HtpX — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase 0.49 ABCV34_RS02205 protease HtpX — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS01825 RNA pyrophosphohydrolase 0.50 HSERO_RS09810 heat shock protein HtpX low > 78
Dechlorosoma suillum PS 0.51 Dsui_1325 ADP-ribose pyrophosphatase 0.51 Dsui_1149 Zn-dependent protease with chaperone function low > 51
Bosea sp. OAE506 0.30 ABIE41_RS07545 RNA pyrophosphohydrolase 0.15 ABIE41_RS05110 zinc metalloprotease HtpX — —
Brevundimonas sp. GW460-12-10-14-LB2 0.28 A4249_RS12500 RNA pyrophosphohydrolase 0.17 A4249_RS14650 zinc metalloprotease HtpX — —

Not shown: 14 genomes with orthologs for PP_5146 only; 17 genomes with orthologs for PP_1871 only