Conservation of cofitness between PP_5146 and PP_1702 in Pseudomonas putida KT2440

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5146 RNA pyrophosphohydrolase 1.0 PP_1702 Recombination-associated protein RdgC 0.45 5
Pseudomonas simiae WCS417 0.99 PS417_26990 RNA pyrophosphohydrolase 0.85 PS417_09245 recombinase RdgC low > 88
Pseudomonas fluorescens SBW25 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.84 PFLU_RS09255 recombination-associated protein RdgC low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS28650 RNA pyrophosphohydrolase 0.84 PFLU_RS09255 recombination-associated protein RdgC low > 109
Pseudomonas sp. RS175 0.98 PFR28_04831 RNA pyrophosphohydrolase 0.85 PFR28_03182 Recombination-associated protein RdgC low > 88
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_952 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.85 PfGW456L13_4216 DNA recombination-dependent growth factor C low > 87
Pseudomonas fluorescens FW300-N2C3 0.98 AO356_10345 RNA pyrophosphohydrolase 0.86 AO356_19265 recombination-associated protein RdgC low > 104
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_2283 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.86 Pf1N1B4_3731 DNA recombination-dependent growth factor C — —
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3941 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-) 0.86 Pf6N2E2_5768 DNA recombination-dependent growth factor C low > 103
Pseudomonas fluorescens FW300-N2E3 0.98 AO353_08470 RNA pyrophosphohydrolase 0.87 AO353_02515 recombination-associated protein RdgC low > 101
Pseudomonas syringae pv. syringae B728a 0.98 Psyr_4843 NUDIX hydrolase 0.86 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.98 Psyr_4843 NUDIX hydrolase 0.86 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas sp. S08-1 0.92 OH686_11425 Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase 0.79 OH686_19640 DNA recombination-dependent growth factor RdgC low > 80
Pseudomonas stutzeri RCH2 0.92 Psest_3863 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.78 Psest_1532 DNA recombination-dependent growth factor C — —
Escherichia coli BL21 0.70 ECD_02678 RNA pyrophosphohydrolase 0.45 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.70 OHPLBJKB_00900 RNA pyrophosphohydrolase 0.45 OHPLBJKB_03282 Recombination-associated protein RdgC — —
Enterobacter asburiae PDN3 0.70 EX28DRAFT_2905 NTP pyrophosphohydrolases including oxidative damage repair enzymes 0.43 EX28DRAFT_2579 DNA recombination-dependent growth factor C — —
Escherichia coli Nissle 1917 0.70 ECOLIN_RS15880 RNA pyrophosphohydrolase 0.45 ECOLIN_RS02385 recombination-associated protein RdgC — —
Escherichia fergusonii Becca 0.70 EFB2_01054 RNA pyrophosphohydrolase 0.45 EFB2_03663 Recombination-associated protein RdgC — —
Escherichia coli BW25113 0.70 b2830 nudH dinucleoside polyphosphate hydrolase (NCBI) 0.45 b0393 rdgC recombination associated protein (NCBI) low > 76
Dickeya dianthicola ME23 0.70 DZA65_RS05295 RNA pyrophosphohydrolase 0.43 DZA65_RS05790 recombination-associated protein RdgC low > 75
Escherichia coli ECRC101 0.69 OKFHMN_20000 rppH RNA pyrophosphohydrolase 0.45 OKFHMN_08570 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC62 0.69 BNILDI_10365 rppH RNA pyrophosphohydrolase 0.45 BNILDI_22915 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC102 0.69 NIAGMN_17770 rppH RNA pyrophosphohydrolase 0.45 NIAGMN_06625 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC101 0.69 MCAODC_10525 rppH RNA pyrophosphohydrolase 0.45 MCAODC_27795 rdgC recombination-associated protein RdgC — —
Escherichia coli ECOR38 0.69 HEPCGN_19255 rppH RNA pyrophosphohydrolase 0.45 HEPCGN_07210 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC98 0.69 JDDGAC_23665 rppH RNA pyrophosphohydrolase 0.45 JDDGAC_12225 rdgC recombination-associated protein RdgC — —
Escherichia coli ECOR27 0.69 NOLOHH_11885 rppH RNA pyrophosphohydrolase 0.45 NOLOHH_01500 rdgC recombination-associated protein RdgC — —
Dickeya dianthicola 67-19 0.69 HGI48_RS04955 RNA pyrophosphohydrolase 0.43 HGI48_RS05465 recombination-associated protein RdgC — —
Escherichia coli ECRC99 0.69 KEDOAH_08130 rppH RNA pyrophosphohydrolase 0.45 KEDOAH_19395 rdgC recombination-associated protein RdgC — —
Dickeya dadantii 3937 0.69 DDA3937_RS04945 RNA pyrophosphohydrolase 0.44 DDA3937_RS05405 recombination-associated protein RdgC low > 74
Erwinia tracheiphila SCR3 0.69 LU632_RS06105 rppH RNA pyrophosphohydrolase 0.42 LU632_RS18955 rdgC recombination-associated protein RdgC — —
Pantoea sp. MT58 0.69 IAI47_03915 RNA pyrophosphohydrolase 0.44 IAI47_14910 recombination-associated protein RdgC low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS23275 RNA pyrophosphohydrolase 0.43 BWI76_RS06205 recombination-associated protein RdgC — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.69 GFF1312 'Adenosine (5')-pentaphospho-(5'')-adenosine pyrophosphohydrolase (EC 3.6.1.-)' transl_table=11 0.44 GFF4290 DNA recombination-dependent growth factor C low > 78
Pectobacterium carotovorum WPP14 0.69 HER17_RS16585 RNA pyrophosphohydrolase 0.43 HER17_RS16060 recombination-associated protein RdgC — —
Serratia liquefaciens MT49 0.69 IAI46_20455 RNA pyrophosphohydrolase 0.43 IAI46_04710 recombination-associated protein RdgC low > 86
Rahnella sp. WP5 0.68 EX31_RS13205 RNA pyrophosphohydrolase 0.44 EX31_RS21990 recombination-associated protein RdgC — —
Shewanella amazonensis SB2B 0.67 Sama_0863 dinucleoside polyphosphate hydrolase (RefSeq) 0.41 Sama_1072 rdgC recombination associated protein (RefSeq) — —
Shewanella loihica PV-4 0.67 Shew_1038 dinucleoside polyphosphate hydrolase (RefSeq) 0.39 Shew_2751 rdgC recombination associated protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.66 MIT1002_00647 RNA pyrophosphohydrolase 0.31 MIT1002_00749 Recombination-associated protein RdgC low > 70
Shewanella sp. ANA-3 0.66 Shewana3_3043 dinucleoside polyphosphate hydrolase (RefSeq) 0.39 Shewana3_2881 rdgC recombination associated protein (RefSeq) — —
Shewanella oneidensis MR-1 0.66 SO1331 MutT/nudix family protein (NCBI ptt file) 0.39 SO1556 conserved hypothetical protein (NCBI ptt file) low > 76
Rhodanobacter denitrificans FW104-10B01 0.65 LRK54_RS09330 RNA pyrophosphohydrolase 0.33 LRK54_RS10690 recombination-associated protein RdgC — —
Rhodanobacter denitrificans MT42 0.65 LRK55_RS08860 RNA pyrophosphohydrolase 0.33 LRK55_RS10330 recombination-associated protein RdgC — —
Dyella japonica UNC79MFTsu3.2 0.65 ABZR86_RS13805 RNA pyrophosphohydrolase 0.35 ABZR86_RS16505 recombination-associated protein RdgC — —
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_15860 RNA pyrophosphohydrolase 0.34 OKGIIK_13190 rdgC recombination-associated protein RdgC — —
Enterobacter sp. TBS_079 0.60 MPMX20_03693 RNA pyrophosphohydrolase 0.43 MPMX20_00982 Recombination-associated protein RdgC — —
Castellaniella sp019104865 MT123 0.53 ABCV34_RS09820 RNA pyrophosphohydrolase 0.28 ABCV34_RS04480 recombination-associated protein RdgC — —
Herbaspirillum seropedicae SmR1 0.52 HSERO_RS01825 RNA pyrophosphohydrolase 0.30 HSERO_RS21640 recombinase RdgC low > 78
Dechlorosoma suillum PS 0.51 Dsui_1325 ADP-ribose pyrophosphatase 0.33 Dsui_2147 DNA recombination-dependent growth factor C — —

Not shown: 16 genomes with orthologs for PP_5146 only; 17 genomes with orthologs for PP_1702 only