Conservation of cofitness between PP_5093 and PP_0397 in Pseudomonas putida KT2440

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5093 twitching motility protein 1.0 PP_0397 protein kinase 0.15 10
Pseudomonas sp. S08-1 0.55 OH686_10970 Twitching motility protein PilT 0.95 OH686_15020 Uncharacterized protein YeaG low > 80
Shewanella amazonensis SB2B 0.55 Sama_2476 twitching motility protein (RefSeq) 0.82 Sama_1921 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 62
Pseudomonas stutzeri RCH2 0.55 Psest_0285 pilus retraction protein PilT 0.96 Psest_3672 Putative Ser protein kinase low > 67
Marinobacter adhaerens HP15 0.55 HP15_289 twitching motility protein PilT 0.82 HP15_2933 serine protein kinase, PrkA low > 73
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_08155 twitching motility protein PilT 0.96 AO353_07335 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0478 pilus retraction ATPase PilT 0.98 Psyr_4631 PrkA serine kinase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0478 pilus retraction ATPase PilT 0.98 Psyr_4631 PrkA serine kinase low > 86
Shewanella sp. ANA-3 0.54 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) 0.81 Shewana3_1638 putative serine protein kinase, PrkA (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_02460 type IV pili twitching motility protein PilT 0.81 CSW01_09380 PrkA family serine protein kinase low > 62
Shewanella loihica PV-4 0.54 Shew_1138 twitching motility protein (RefSeq) 0.80 Shew_1833 putative serine protein kinase, PrkA (RefSeq) low > 60
Shewanella oneidensis MR-1 0.54 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.80 SO2882 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Pseudomonas sp. RS175 0.54 PFR28_04241 Twitching mobility protein 0.96 PFR28_04068 hypothetical protein 0.66 14
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1012 Twitching motility protein PilT 0.96 PfGW456L13_1196 Serine protein kinase (prkA protein), P-loop containing low > 87
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2343 Twitching motility protein PilT 0.96 Pf1N1B4_2523 Serine protein kinase (prkA protein), P-loop containing low > 87
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_4602 Twitching motility protein PilT 0.96 Pf6N2E2_4801 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 103
Pseudomonas simiae WCS417 0.53 PS417_26720 twitching motility protein PilT 0.95 PS417_25830 serine/threonine protein kinase low > 88
Alteromonas macleodii MIT1002 0.53 MIT1002_03060 Twitching mobility protein 0.80 MIT1002_01233 PrkA family serine protein kinase low > 70
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.95 PFLU_RS27485 PrkA family serine protein kinase low > 109
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_13430 twitching motility protein PilT 0.96 AO356_14315 yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 104
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.95 PFLU_RS27485 PrkA family serine protein kinase low > 109
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS01220 type IV pilus twitching motility protein PilT 0.80 ABZR87_RS14220 PrkA family serine protein kinase low > 80
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS17350 twitching motility protein PilT 0.80 RR42_RS36485 serine/threonine protein kinase low > 128
Variovorax sp. OAS795 0.49 ABID97_RS00255 type IV pilus twitching motility protein PilT 0.81 ABID97_RS10270 PrkA family serine protein kinase low > 91
Dickeya dianthicola ME23 0.49 DZA65_RS18430 type IV pilus twitching motility protein PilT 0.80 DZA65_RS10730 PrkA family serine protein kinase low > 75
Variovorax sp. SCN45 0.49 GFF3743 Twitching motility protein PilT 0.80 GFF2932 Uncharacterized protein YeaG low > 127
Dickeya dianthicola 67-19 0.48 HGI48_RS17340 type IV pilus twitching motility protein PilT 0.80 HGI48_RS10255 PrkA family serine protein kinase low > 71
Acidovorax sp. GW101-3H11 0.48 Ac3H11_4473 Twitching motility protein PilT 0.80 Ac3H11_1145 Serine protein kinase (prkA protein), P-loop containing low > 79
Dickeya dadantii 3937 0.47 DDA3937_RS17295 type IV pilus twitching motility protein PilT 0.80 DDA3937_RS10245 PrkA family serine protein kinase low > 74
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS19000 twitching motility protein PilT 0.79 HSERO_RS21690 PrkA family serine protein kinase low > 78
Pectobacterium carotovorum WPP14 0.46 HER17_RS03815 type IV pilus twitching motility protein PilT 0.80 HER17_RS11150 protein kinase YeaG low > 75
Rahnella sp. WP5 0.45 EX31_RS02680 type IV pilus twitching motility protein PilT 0.79 EX31_RS06260 protein kinase YeaG low > 89
Pantoea sp. MT58 0.45 IAI47_03600 type IV pilus twitching motility protein PilT 0.80 IAI47_08925 protein kinase YeaG low > 76
Serratia liquefaciens MT49 0.45 IAI46_21405 type IV pilus twitching motility protein PilT 0.80 IAI46_14375 protein kinase YeaG low > 86
Enterobacter sp. TBS_079 0.43 MPMX20_03808 putative protein YggR 0.80 MPMX20_01840 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2988 pilus retraction protein PilT 0.80 EX28DRAFT_1776 putative serine protein kinase, PrkA low > 76
Escherichia fergusonii Becca 0.39 EFB2_00952 putative protein YggR 0.80 EFB2_02211 hypothetical protein low > 86
Escherichia coli BL21 0.39 ECD_02780 putative PilT family AAA+ ATPase 0.76 ECD_01752 protein kinase, endogenous substrate unidentified; autokinase low > 60
Escherichia coli Nissle 1917 0.39 ECOLIN_RS16410 type IV pilus twitching motility protein PilT 0.80 ECOLIN_RS09940 protein kinase YeaG — —
Escherichia coli BW25113 0.39 b2950 yggR putative protein transport (VIMSS) 0.80 b1783 yeaG yeaG component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli ECRC62 0.39 BNILDI_09710 yggR Uncharacterized protein YggR 0.80 BNILDI_16025 yeaG protein kinase YeaG — —
Escherichia coli ECOR38 0.39 HEPCGN_18565 yggR Uncharacterized protein YggR 0.80 HEPCGN_05100 yeaG protein kinase YeaG low > 85
Escherichia coli ECOR27 0.39 NOLOHH_11130 yggR Uncharacterized protein YggR 0.80 NOLOHH_17240 yeaG protein kinase YeaG low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF3053 Twitching motility protein PilT 0.80 GFF3473 Serine protein kinase (prkA protein), P-loop containing low > 78
Escherichia coli ECRC102 0.39 NIAGMN_17025 yggR Uncharacterized protein YggR 0.80 NIAGMN_01355 yeaG protein kinase YeaG — —
Escherichia coli ECRC101 0.39 MCAODC_09780 yggR Uncharacterized protein YggR 0.80 MCAODC_18700 yeaG protein kinase YeaG — —
Escherichia coli ECRC98 0.39 JDDGAC_22890 yggR Uncharacterized protein YggR 0.80 JDDGAC_01285 yeaG protein kinase YeaG — —
Escherichia coli ECRC101 0.39 OKFHMN_19260 yggR Uncharacterized protein YggR 0.80 OKFHMN_26710 yeaG protein kinase YeaG — —
Escherichia coli ECRC99 0.39 KEDOAH_08880 yggR Uncharacterized protein YggR 0.80 KEDOAH_01400 yeaG protein kinase YeaG — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00766 putative protein YggR 0.80 OHPLBJKB_01949 hypothetical protein low > 73
Klebsiella michiganensis M5al 0.38 BWI76_RS24095 twitching motility protein PilT 0.80 BWI76_RS11485 serine protein kinase PrkA low > 92

Not shown: 19 genomes with orthologs for PP_5093 only; 12 genomes with orthologs for PP_0397 only