Conservation of cofitness between PP_5093 and PP_0395 in Pseudomonas putida KT2440

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_5093 twitching motility protein 1.0 PP_0395 putative type IV piliation protein 0.14 17
Pseudomonas sp. S08-1 0.55 OH686_10970 Twitching motility protein PilT 0.87 OH686_15010 SpoVR-like protein low > 80
Shewanella amazonensis SB2B 0.55 Sama_2476 twitching motility protein (RefSeq) 0.69 Sama_1923 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 62
Pseudomonas stutzeri RCH2 0.55 Psest_0285 pilus retraction protein PilT 0.86 Psest_3674 Uncharacterized conserved protein low > 67
Marinobacter adhaerens HP15 0.55 HP15_289 twitching motility protein PilT 0.74 HP15_2935 SpoVR family protein low > 73
Pseudomonas fluorescens FW300-N2E3 0.55 AO353_08155 twitching motility protein PilT 0.89 AO353_07345 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.55 Psyr_0478 pilus retraction ATPase PilT 0.91 Psyr_4633 SpoVR low > 86
Pseudomonas syringae pv. syringae B728a 0.55 Psyr_0478 pilus retraction ATPase PilT 0.91 Psyr_4633 SpoVR low > 86
Shewanella sp. ANA-3 0.54 Shewana3_1195 pilus retraction ATPase PilT (RefSeq) 0.67 Shewana3_1636 SpoVR family protein (RefSeq) low > 73
Vibrio cholerae E7946 ATCC 55056 0.54 CSW01_02460 type IV pili twitching motility protein PilT 0.68 CSW01_09390 SpoVR family protein low > 62
Shewanella loihica PV-4 0.54 Shew_1138 twitching motility protein (RefSeq) 0.67 Shew_1831 hypothetical protein (RefSeq) low > 60
Shewanella oneidensis MR-1 0.54 SO3351 pilT twitching motility protein PilT (NCBI ptt file) 0.67 SO2884 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_1012 Twitching motility protein PilT 0.89 PfGW456L13_1194 FIG004684: SpoVR-like protein low > 87
Pseudomonas sp. RS175 0.54 PFR28_04241 Twitching mobility protein 0.92 PFR28_04070 hypothetical protein 0.64 17
Pseudomonas fluorescens FW300-N2E2 0.53 Pf6N2E2_4602 Twitching motility protein PilT 0.90 Pf6N2E2_4799 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 103
Pseudomonas fluorescens FW300-N1B4 0.53 Pf1N1B4_2343 Twitching motility protein PilT 0.89 Pf1N1B4_2521 FIG004684: SpoVR-like protein low > 87
Pseudomonas simiae WCS417 0.53 PS417_26720 twitching motility protein PilT 0.88 PS417_25840 SpoVR family protein low > 88
Alteromonas macleodii MIT1002 0.53 MIT1002_03060 Twitching mobility protein 0.67 MIT1002_01231 SpoVR family protein low > 70
Pseudomonas fluorescens SBW25 0.53 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.88 PFLU_RS27495 SpoVR family protein low > 109
Pseudomonas fluorescens SBW25-INTG 0.53 PFLU_RS28365 type IV pilus twitching motility protein PilT 0.88 PFLU_RS27495 SpoVR family protein low > 109
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_13430 twitching motility protein PilT 0.92 AO356_14305 ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 104
Ralstonia sp. UNC404CL21Col 0.51 ABZR87_RS01220 type IV pilus twitching motility protein PilT 0.64 ABZR87_RS14210 SpoVR family protein low > 80
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS17350 twitching motility protein PilT 0.67 RR42_RS36475 SpoVR family protein low > 128
Dickeya dianthicola ME23 0.49 DZA65_RS18430 type IV pilus twitching motility protein PilT 0.68 DZA65_RS11545 SpoVR family protein low > 75
Variovorax sp. SCN45 0.49 GFF3743 Twitching motility protein PilT 0.67 GFF2935 FIG004684: SpoVR-like protein low > 127
Dickeya dianthicola 67-19 0.48 HGI48_RS17340 type IV pilus twitching motility protein PilT 0.68 HGI48_RS11200 SpoVR family protein low > 71
Acidovorax sp. GW101-3H11 0.48 Ac3H11_4473 Twitching motility protein PilT 0.63 Ac3H11_1147 FIG004684: SpoVR-like protein low > 79
Dickeya dadantii 3937 0.47 DDA3937_RS17295 type IV pilus twitching motility protein PilT 0.68 DDA3937_RS11175 SpoVR family protein low > 74
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS19000 twitching motility protein PilT 0.66 HSERO_RS21700 SpoVR family protein low > 78
Pectobacterium carotovorum WPP14 0.46 HER17_RS03815 type IV pilus twitching motility protein PilT 0.68 HER17_RS11210 SpoVR family protein low > 75
Rahnella sp. WP5 0.45 EX31_RS02680 type IV pilus twitching motility protein PilT 0.67 EX31_RS10500 SpoVR family protein low > 89
Pantoea sp. MT58 0.45 IAI47_03600 type IV pilus twitching motility protein PilT 0.67 IAI47_08885 SpoVR family protein low > 76
Serratia liquefaciens MT49 0.45 IAI46_21405 type IV pilus twitching motility protein PilT 0.67 IAI46_14470 SpoVR family protein low > 86
Enterobacter sp. TBS_079 0.43 MPMX20_03808 putative protein YggR 0.67 MPMX20_02700 hypothetical protein low > 85
Enterobacter asburiae PDN3 0.42 EX28DRAFT_2988 pilus retraction protein PilT 0.68 EX28DRAFT_0765 Uncharacterized conserved protein low > 76
Escherichia fergusonii Becca 0.39 EFB2_00952 putative protein YggR 0.67 EFB2_02744 hypothetical protein low > 86
Escherichia coli BL21 0.39 ECD_02780 putative PilT family AAA+ ATPase 0.67 ECD_01163 SpoVR family stationary phase protein low > 60
Escherichia coli Nissle 1917 0.39 ECOLIN_RS16410 type IV pilus twitching motility protein PilT 0.67 ECOLIN_RS07180 SpoVR family protein — —
Escherichia coli BW25113 0.39 b2950 yggR putative protein transport (VIMSS) 0.67 b1188 ycgB ycgB component of nitrogen-related signalling system (of yeaGH-ycgB) (from data) low > 76
Escherichia coli ECOR38 0.39 HEPCGN_18565 yggR Uncharacterized protein YggR 0.67 HEPCGN_24745 ycgB SpoVR family protein low > 85
Escherichia coli ECRC62 0.39 BNILDI_09710 yggR Uncharacterized protein YggR 0.67 BNILDI_18895 ycgB SpoVR family protein — —
Escherichia coli ECOR27 0.39 NOLOHH_11130 yggR Uncharacterized protein YggR 0.67 NOLOHH_20730 ycgB SpoVR family protein low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF3053 Twitching motility protein PilT 0.68 GFF2805 FIG004684: SpoVR-like protein low > 78
Escherichia coli ECRC101 0.39 OKFHMN_19260 yggR Uncharacterized protein YggR 0.67 OKFHMN_28285 ycgB SpoVR family protein — —
Escherichia coli ECRC101 0.39 MCAODC_09780 yggR Uncharacterized protein YggR 0.67 MCAODC_21885 ycgB SpoVR family protein — —
Escherichia coli ECRC98 0.39 JDDGAC_22890 yggR Uncharacterized protein YggR 0.67 JDDGAC_06225 ycgB SpoVR family protein — —
Escherichia coli ECRC102 0.39 NIAGMN_17025 yggR Uncharacterized protein YggR 0.67 NIAGMN_27935 ycgB SpoVR family protein — —
Escherichia coli ECRC99 0.39 KEDOAH_08880 yggR Uncharacterized protein YggR 0.67 KEDOAH_25300 ycgB SpoVR family protein — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00766 putative protein YggR 0.67 OHPLBJKB_02501 hypothetical protein low > 73
Klebsiella michiganensis M5al 0.38 BWI76_RS24095 twitching motility protein PilT 0.68 BWI76_RS17740 SpoVR family protein low > 92

Not shown: 20 genomes with orthologs for PP_5093 only; 13 genomes with orthologs for PP_0395 only