| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas fluorescens SBW25 | 1.0 | PFLU_RS07240 | | sigma factor AlgU regulatory protein MucB | 1.0 | PFLU_RS23755 | | sugar ABC transporter permease | 0.54 | 15 |
| Pseudomonas fluorescens SBW25-INTG | 1.00 | PFLU_RS07240 | | sigma factor AlgU regulatory protein MucB | 1.00 | PFLU_RS23755 | | sugar ABC transporter permease | low | > 109 |
| Pseudomonas simiae WCS417 | 0.92 | PS417_07130 | | RNA polymerase sigma-H factor AlgU | 0.99 | PS417_22140 | | glucose/xylose ABC transporter, permease component 2 (from data) | low | > 88 |
| Pseudomonas fluorescens FW300-N2E3 | 0.76 | AO353_17635 | | RNA polymerase subunit sigma | 0.91 | AO353_03390 | | sugar ABC transporter permease | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.75 | Pf1N1B4_3325 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.91 | Pf1N1B4_595 | | Glucose ABC transport system, inner membrane component 1 | low | > 87 |
| Pseudomonas fluorescens GW456-L13 | 0.75 | PfGW456L13_4514 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.91 | PfGW456L13_1895 | | ABC transporter for D-Galactose and D-Glucose, permease component 1 (from data) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.72 | AO356_04565 | | RNA polymerase subunit sigma | 0.97 | AO356_05190 | | sugar ABC transporter permease | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.71 | Pf6N2E2_2754 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.96 | Pf6N2E2_2891 | | Glucose ABC transport system, inner membrane component 1 | low | > 103 |
| Pseudomonas sp. RS175 | 0.70 | PFR28_00692 | | Sigma factor AlgU regulatory protein MucB | 0.97 | PFR28_00567 | | Melibiose/raffinose/stachyose import permease protein MelD | low | > 88 |
| Pseudomonas putida KT2440 | 0.61 | PP_1429 | | Sigma factor AlgU regulatory protein MucB | 0.92 | PP_1016 | | mannose/glucose ABC transporter, permease protein | low | > 96 |
| Pseudomonas syringae pv. syringae B728a | 0.58 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | 0.92 | Psyr_1114 | | glucose ABC transporter membrane protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.58 | Psyr_3956 | | sigma E regulatory protein, MucB/RseB | 0.92 | Psyr_1114 | | glucose ABC transporter membrane protein | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_3098 | | Negative regulator of sigma E activity | 0.86 | Psest_1897 | | ABC-type sugar transport systems, permease components | — | — |
| Pseudomonas sp. S08-1 | 0.51 | OH686_20055 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.90 | OH686_02465 | | Glucose ABC transport system, inner membrane component 1 | — | — |
| Marinobacter adhaerens HP15 | 0.22 | HP15_777 | | sigma E regulatory protein, MucB/RseB | 0.74 | HP15_2957 | | sugar ABC transporter, permease protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.17 | GFF3341 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.20 | GFF1260 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | low | > 90 |
| Burkholderia phytofirmans PsJN | 0.17 | BPHYT_RS14395 | | sugar dehydratase | 0.60 | BPHYT_RS05030 | | sugar ABC transporter permease | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.16 | H281DRAFT_04357 | | sigma E regulatory protein, MucB/RseB | 0.60 | H281DRAFT_00167 | | carbohydrate ABC transporter membrane protein 1, CUT1 family | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.16 | ABIE53_003041 | | sigma-E factor negative regulatory protein RseB | 0.60 | ABIE53_001278 | | glucose/mannose transport system permease protein | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.16 | QEN71_RS04585 | | MucB/RseB C-terminal domain-containing protein | 0.61 | QEN71_RS03340 | | sugar ABC transporter permease | low | > 153 |
| Cupriavidus basilensis FW507-4G11 | 0.15 | RR42_RS14070 | | sugar dehydratase | 0.18 | RR42_RS12965 | | glycerol-3-phosphate transporter permease | low | > 128 |
| Pantoea sp. MT58 | 0.15 | IAI47_04860 | | sigma-E factor regulatory protein RseB | 0.21 | IAI47_17540 | | sugar ABC transporter permease | low | > 76 |
| Herbaspirillum seropedicae SmR1 | 0.14 | HSERO_RS09635 | | transcriptional regulator | 0.20 | HSERO_RS18950 | | glycerol-3-phosphate transporter permease | low | > 78 |
| Dickeya dadantii 3937 | 0.14 | DDA3937_RS15755 | | sigma-E factor regulatory protein RseB | 0.17 | DDA3937_RS17720 | | sugar ABC transporter permease | low | > 74 |
| Acidovorax sp. GW101-3H11 | 0.13 | Ac3H11_1571 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.67 | Ac3H11_2064 | | glucose ABC transporter, permease component 1 (from data) | — | — |
| Klebsiella michiganensis M5al | 0.13 | BWI76_RS21345 | | sigma-E factor regulatory protein RseB | 0.16 | BWI76_RS26300 | | glycerol-3-phosphate transporter permease | low | > 92 |
| Enterobacter sp. TBS_079 | 0.13 | MPMX20_03442 | | Sigma-E factor regulatory protein RseB | 0.16 | MPMX20_04328 | | sn-glycerol-3-phosphate transport system permease protein UgpA | low | > 85 |
| Enterobacter asburiae PDN3 | 0.13 | EX28DRAFT_0074 | | sigma E regulatory protein, MucB/RseB | 0.15 | EX28DRAFT_4284 | | ABC-type sugar transport systems, permease components | low | > 76 |
| Rahnella sp. WP5 | 0.13 | EX31_RS21810 | | sigma-E factor regulatory protein RseB | 0.17 | EX31_RS06455 | | sugar ABC transporter permease | low | > 89 |
| Escherichia coli ECRC102 | 0.13 | NIAGMN_19155 | rseB | sigma-E factor regulatory protein RseB | 0.15 | NIAGMN_14545 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli BL21 | 0.13 | ECD_02465 | | anti-sigma E factor, binds RseA | 0.15 | ECD_03301 | | sn-glycerol-3-phosphate ABC transporter permease | low | > 61 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.13 | OHPLBJKB_01136 | | Sigma-E factor regulatory protein RseB | 0.15 | OHPLBJKB_00251 | | sn-glycerol-3-phosphate transport system permease protein UgpA | low | > 73 |
| Escherichia coli ECOR38 | 0.13 | HEPCGN_20530 | rseB | sigma-E factor regulatory protein RseB | 0.15 | HEPCGN_15595 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 87 |
| Escherichia coli BW25113 | 0.13 | b2571 | rseB | periplasmic negative regulator of sigmaE (NCBI) | 0.15 | b3452 | ugpA | glycerol-3-phosphate transporter subunit (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.13 | OKFHMN_21385 | rseB | sigma-E factor regulatory protein RseB | 0.15 | OKFHMN_16775 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 80 |
| Escherichia coli ECRC62 | 0.13 | BNILDI_11860 | rseB | sigma-E factor regulatory protein RseB | 0.15 | BNILDI_02940 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 75 |
| Escherichia fergusonii Becca | 0.13 | EFB2_01325 | | Sigma-E factor regulatory protein RseB | 0.15 | EFB2_00370 | | sn-glycerol-3-phosphate transport system permease protein UgpA | low | > 86 |
| Escherichia coli ECRC98 | 0.13 | JDDGAC_25050 | rseB | sigma-E factor regulatory protein RseB | 0.15 | JDDGAC_20405 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 86 |
| Escherichia coli ECRC101 | 0.13 | MCAODC_11915 | rseB | sigma-E factor regulatory protein RseB | 0.15 | MCAODC_07305 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 87 |
| Escherichia coli ECRC99 | 0.13 | KEDOAH_06835 | rseB | sigma-E factor regulatory protein RseB | 0.15 | KEDOAH_11365 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Escherichia coli Nissle 1917 | 0.13 | ECOLIN_RS14550 | | sigma-E factor regulatory protein RseB | 0.15 | ECOLIN_RS19740 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 55 |
| Escherichia coli ECOR27 | 0.13 | NOLOHH_13060 | rseB | sigma-E factor regulatory protein RseB | 0.15 | NOLOHH_08565 | ugpA | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 75 |
| Ralstonia solanacearum PSI07 | 0.13 | RPSI07_RS19005 | | sugar dehydratase | 0.18 | RPSI07_RS17795 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 81 |
| Pectobacterium carotovorum WPP14 | 0.13 | HER17_RS05790 | | sigma-E factor regulatory protein RseB | 0.18 | HER17_RS03520 | | sugar ABC transporter permease | low | > 75 |
| Ralstonia solanacearum IBSBF1503 | 0.13 | RALBFv3_RS14455 | | sugar dehydratase | 0.18 | RALBFv3_RS15560 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 76 |
| Ralstonia solanacearum UW163 | 0.13 | UW163_RS11920 | | sugar dehydratase | 0.18 | UW163_RS13020 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | — | — |
| Ralstonia sp. UNC404CL21Col | 0.13 | ABZR87_RS10175 | | MucB/RseB C-terminal domain-containing protein | 0.19 | ABZR87_RS11090 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 80 |
| Variovorax sp. OAS795 | 0.12 | ABID97_RS08340 | | MucB/RseB C-terminal domain-containing protein | 0.19 | ABID97_RS07225 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | low | > 91 |
| Serratia liquefaciens MT49 | 0.12 | IAI46_19575 | | sigma-E factor regulatory protein RseB | 0.16 | IAI46_12945 | | sugar ABC transporter permease | low | > 86 |
| Castellaniella sp019104865 MT123 | 0.12 | ABCV34_RS08345 | | MucB/RseB C-terminal domain-containing protein | 0.18 | ABCV34_RS03600 | | sn-glycerol-3-phosphate ABC transporter permease UgpA | 0.81 | 39 |
| Variovorax sp. SCN45 | 0.12 | GFF3865 | | Sigma factor RpoE negative regulatory protein RseB precursor | 0.17 | GFF2536 | | Glycerol-3-phosphate ABC transporter, permease protein UgpA (TC 3.A.1.1.3) | 0.50 | 37 |
Not shown: 10 genomes with orthologs for PFLU_RS07240 only; 11 genomes with orthologs for PFLU_RS23755 only