Conservation of cofitness between MCAODC_14410 and MCAODC_12245 in Escherichia coli ECRC101

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli ECRC101 1.0 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.0 MCAODC_12245 rodZ cytoskeleton protein RodZ 0.62 11
Escherichia coli ECOR27 1.00 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.99 NOLOHH_13365 rodZ cytoskeleton protein RodZ low > 75
Escherichia coli ECRC102 1.00 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 NIAGMN_19485 rodZ cytoskeleton protein RodZ — —
Escherichia coli BW25113 1.00 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.99 b2516 yfgA hypothetical protein (NCBI) low > 76
Escherichia coli Nissle 1917 1.00 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.90 ECOLIN_RS14295 cytoskeleton protein RodZ — —
Escherichia coli ECRC98 1.00 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 JDDGAC_25390 rodZ cytoskeleton protein RodZ low > 86
Escherichia fergusonii Becca 1.00 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.90 EFB2_01374 Cytoskeleton protein RodZ low > 86
Escherichia coli BL21 1.00 ECD_02113 16S rRNA pseudouridine(516) synthase 1.00 ECD_02408 MreB assembly cytoskeletal protein low > 61
Escherichia coli ECRC62 1.00 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 BNILDI_12165 rodZ cytoskeleton protein RodZ low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 1.00 OHPLBJKB_01193 Cytoskeleton protein RodZ low > 73
Escherichia coli ECRC100 1.00 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 OKFHMN_21715 rodZ cytoskeleton protein RodZ low > 80
Escherichia coli ECRC99 1.00 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 1.00 KEDOAH_06505 rodZ cytoskeleton protein RodZ — —
Escherichia coli ECOR38 0.99 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.89 HEPCGN_20835 rodZ cytoskeleton protein RodZ low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.95 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.79 GFF2413 FIG021952: putative membrane protein low > 78
Enterobacter asburiae PDN3 0.91 EX28DRAFT_0378 pseudouridine synthase 0.77 EX28DRAFT_0127 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.90 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.77 MPMX20_03394 Cytoskeleton protein RodZ low > 85
Klebsiella michiganensis M5al 0.89 BWI76_RS19810 16S rRNA pseudouridine(516) synthase 0.73 BWI76_RS21090 cytoskeletal protein RodZ — —
Pantoea sp. MT58 0.84 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.60 IAI47_05050 cytoskeleton protein RodZ low > 76
Serratia liquefaciens MT49 0.83 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.65 IAI46_19280 cytoskeleton protein RodZ low > 86
Erwinia tracheiphila SCR3 0.82 LU632_RS17595 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.58 LU632_RS17805 rodZ cytoskeleton protein RodZ low > 74
Dickeya dadantii 3937 0.81 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.19 DDA3937_RS15470 cytoskeleton protein RodZ low > 74
Pectobacterium carotovorum WPP14 0.81 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.51 HER17_RS06095 cytoskeleton protein RodZ low > 75
Dickeya dianthicola 67-19 0.80 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.51 HGI48_RS15580 cytoskeleton protein RodZ low > 71
Dickeya dianthicola ME23 0.80 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.50 DZA65_RS16655 cytoskeleton protein RodZ low > 75
Rahnella sp. WP5 0.79 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.56 EX31_RS20515 cytoskeleton protein RodZ low > 89
Vibrio cholerae E7946 ATCC 55056 0.55 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.26 CSW01_03935 cytoskeleton protein RodZ 0.45 7
Shewanella loihica PV-4 0.54 Shew_2975 pseudouridine synthase (RefSeq) 0.19 Shew_1289 hypothetical protein (RefSeq) low > 60
Shewanella sp. ANA-3 0.54 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.18 Shewana3_1228 hypothetical protein (RefSeq) low > 73
Shewanella amazonensis SB2B 0.51 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.19 Sama_2366 hypothetical protein (RefSeq) low > 62
Marinobacter adhaerens HP15 0.44 HP15_3359 pseudouridine synthase, Rsu 0.14 HP15_1492 conserved hypothetical protein low > 73
Pseudomonas fluorescens FW300-N1B4 0.43 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.11 Pf1N1B4_855 FIG021952: putative membrane protein low > 87
Pseudomonas simiae WCS417 0.42 PS417_07010 pseudouridine synthase 0.11 PS417_23150 Cro/Cl family transcriptional regulator low > 88
Pseudomonas fluorescens SBW25 0.42 PFLU_RS07085 pseudouridine synthase 0.15 PFLU_RS24805 helix-turn-helix domain-containing protein low > 109
Pseudomonas syringae pv. syringae B728a 0.42 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.13 Psyr_1247 conserved hypothetical protein low > 86
Pseudomonas fluorescens SBW25-INTG 0.42 PFLU_RS07085 pseudouridine synthase 0.15 PFLU_RS24805 helix-turn-helix domain-containing protein low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.42 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.13 Psyr_1247 conserved hypothetical protein low > 86
Pseudomonas sp. RS175 0.41 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.11 PFR28_00296 Cytoskeleton protein RodZ low > 88
Pseudomonas sp. S08-1 0.40 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.12 OH686_17525 Cytoskeleton protein RodZ low > 80
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_17535 16S rRNA pseudouridine(516) synthase 0.09 AO353_15885 Cro/Cl family transcriptional regulator low > 101
Pseudomonas fluorescens FW300-N2E2 0.39 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.10 Pf6N2E2_3179 FIG021952: putative membrane protein low > 103
Pseudomonas fluorescens FW300-N2C3 0.39 AO356_04690 16S rRNA pseudouridine(516) synthase 0.10 AO356_06595 Cro/Cl family transcriptional regulator — —
Pseudomonas putida KT2440 0.38 PP_1409 ribosomal small subunit pseudouridine synthase A 0.11 PP_0852 Transcriptional regulator, Cro/CI family low > 96
Pseudomonas stutzeri RCH2 0.38 Psest_3049 pseudouridine synthase 0.13 Psest_1261 Uncharacterized protein conserved in bacteria low > 67
Variovorax sp. SCN45 0.34 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.08 GFF994 Cytoskeleton protein RodZ low > 127
Variovorax sp. OAS795 0.33 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.08 ABID97_RS14220 helix-turn-helix domain-containing protein — —
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS15880 pseudouridine synthase 0.10 RR42_RS13145 DNA-binding protein low > 128
Rhodanobacter denitrificans MT42 0.31 LRK55_RS15690 pseudouridine synthase 0.09 LRK55_RS18075 helix-turn-helix domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.30 LRK54_RS15935 rRNA pseudouridine synthase 0.09 LRK54_RS00080 helix-turn-helix domain-containing protein low > 59
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_09050 Pseudouridine synthase 0.08 OKGIIK_07130 DUF4115 domain-containing protein low > 52
Paraburkholderia graminis OAS925 0.28 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.08 ABIE53_002743 cytoskeleton protein RodZ low > 113
Burkholderia phytofirmans PsJN 0.28 BPHYT_RS15560 pseudouridine synthase 0.10 BPHYT_RS12585 XRE family transcriptional regulator — —

Not shown: 12 genomes with orthologs for MCAODC_14410 only; 10 genomes with orthologs for MCAODC_12245 only