| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Serratia liquefaciens MT49 | 1.0 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 1.0 | IAI46_05185 | | multidrug efflux RND transporter permease subunit SdeY | 0.71 | 4 |
| Rahnella sp. WP5 | 0.92 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.84 | EX31_RS22470 | | multidrug efflux RND transporter permease subunit | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.91 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.81 | HER17_RS15740 | | multidrug efflux RND transporter permease subunit | low | > 75 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.80 | DDA3937_RS05735 | | multidrug efflux RND transporter permease subunit | low | > 74 |
| Dickeya dianthicola ME23 | 0.90 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.80 | DZA65_RS06115 | | multidrug efflux RND transporter permease subunit | low | > 75 |
| Dickeya dianthicola 67-19 | 0.90 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.80 | HGI48_RS05790 | | multidrug efflux RND transporter permease subunit | low | > 71 |
| Pantoea sp. MT58 | 0.89 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.80 | IAI47_14515 | | multidrug efflux RND transporter permease subunit | low | > 76 |
| Escherichia coli ECRC101 | 0.88 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | OKFHMN_08205 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC101 | 0.88 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | MCAODC_27430 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECRC98 | 0.88 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.71 | JDDGAC_19905 | mdtF | multidrug efflux pump RND permease MdtF | — | — |
| Escherichia fergusonii Becca | 0.88 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.83 | EFB2_03596 | | Multidrug efflux pump subunit AcrB | low | > 86 |
| Escherichia coli ECRC102 | 0.88 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | NIAGMN_06260 | acrB | efflux RND transporter permease AcrB | — | — |
| Escherichia coli ECOR38 | 0.88 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | HEPCGN_06820 | acrB | efflux RND transporter permease AcrB | low | > 85 |
| Escherichia coli Nissle 1917 | 0.88 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | ECOLIN_RS02750 | | efflux RND transporter permease AcrB | low | > 52 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.88 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.83 | OHPLBJKB_03212 | | Multidrug efflux pump subunit AcrB | low | > 73 |
| Escherichia coli BW25113 | 0.88 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.83 | b0462 | acrB | multidrug efflux system protein (NCBI) | — | — |
| Escherichia coli BL21 | 0.88 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.83 | ECD_00413 | | multidrug efflux system protein | low | > 60 |
| Escherichia coli ECRC99 | 0.88 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | KEDOAH_19760 | acrB | efflux RND transporter permease AcrB | — | — |
| Enterobacter sp. TBS_079 | 0.88 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.83 | MPMX20_01064 | | Multidrug efflux pump subunit AcrB | low | > 85 |
| Escherichia coli ECOR27 | 0.87 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | NOLOHH_01140 | acrB | efflux RND transporter permease AcrB | low | > 57 |
| Klebsiella michiganensis M5al | 0.87 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.83 | BWI76_RS06775 | | multidrug efflux RND transporter permease subunit | low | > 92 |
| Enterobacter asburiae PDN3 | 0.87 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.84 | EX28DRAFT_2496 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 76 |
| Escherichia coli ECRC62 | 0.87 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.83 | BNILDI_22555 | acrB | efflux RND transporter permease AcrB | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.87 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.83 | GFF4379 | | RND efflux system, inner membrane transporter CmeB | low | > 78 |
| Erwinia tracheiphila SCR3 | 0.86 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.81 | LU632_RS18185 | | efflux RND transporter permease subunit | — | — |
| Alteromonas macleodii MIT1002 | 0.66 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | MIT1002_00135 | | Multidrug-efflux transporter MexB | low | > 70 |
| Shewanella sp. ANA-3 | 0.65 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.68 | Shewana3_4045 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | low | > 73 |
| Shewanella loihica PV-4 | 0.64 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.67 | Shew_0032 | | hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) | low | > 60 |
| Shewanella amazonensis SB2B | 0.62 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.68 | Sama_3554 | | AcrB/AcrD/AcrF family protein (RefSeq) | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.67 | Psyr_4008 | | Hydrophobe/amphiphile efflux-1 HAE1 | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.54 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.67 | Pf1N1B4_3246 | | RND efflux system, inner membrane transporter CmeB | — | — |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.47 | B158DRAFT_0733 | | The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family | low | > 40 |
| Pseudomonas syringae pv. syringae B728a | 0.54 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 0.67 | Psyr_4008 | | Hydrophobe/amphiphile efflux-1 HAE1 | low | > 86 |
| Lysobacter sp. OAE881 | 0.53 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.50 | ABIE51_RS17980 | | multidrug efflux RND transporter permease subunit | low | > 62 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.65 | Xcc-8004.1794.1 | | RND efflux system, inner membrane transporter CmeB | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.51 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.48 | LRK55_RS01875 | | multidrug efflux RND transporter permease subunit | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.51 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.48 | LRK54_RS02100 | | multidrug efflux RND transporter permease subunit | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.50 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.63 | ABZR86_RS19190 | | efflux RND transporter permease subunit | low | > 74 |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | OKGIIK_09170 | | Efflux pump membrane transporter | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.42 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | MPMX26_00689 | | Multidrug resistance protein MexB | low | > 36 |
| Ralstonia solanacearum PSI07 | 0.41 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.65 | RPSI07_RS03390 | | multidrug efflux RND transporter permease subunit | 0.47 | 6 |
| Ralstonia solanacearum IBSBF1503 | 0.41 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.65 | RALBFv3_RS19795 | | multidrug efflux RND transporter permease subunit | low | > 76 |
| Ralstonia solanacearum GMI1000 | 0.41 | RS_RS08205 | | RluA family pseudouridine synthase | 0.65 | RS_RS21030 | | multidrug efflux RND transporter permease subunit | low | > 80 |
| Ralstonia solanacearum UW163 | 0.41 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.65 | UW163_RS19380 | | multidrug efflux RND transporter permease subunit | — | — |
| Ralstonia sp. UNC404CL21Col | 0.39 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.56 | ABZR87_RS05315 | | efflux RND transporter permease subunit | low | > 80 |
| Herbaspirillum seropedicae SmR1 | 0.37 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | 0.64 | HSERO_RS06815 | | multidrug transporter | low | > 78 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.35 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.55 | GFF3840 | | RND efflux system, inner membrane transporter CmeB | low | > 90 |
| Azospirillum sp. SherDot2 | 0.35 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.68 | MPMX19_05884 | | Multidrug efflux pump subunit AcrB | low | > 112 |
| Rhodospirillum rubrum S1H | 0.34 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.66 | Rru_A2051 | | Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) | low | > 58 |
| Rhizobium sp. OAE497 | 0.33 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.62 | ABIE40_RS24225 | | efflux RND transporter permease subunit | low | > 107 |
| Acidovorax sp. GW101-3H11 | 0.32 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.53 | Ac3H11_4448 | | RND efflux system, inner membrane transporter CmeB | low | > 79 |
| Variovorax sp. OAS795 | 0.29 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.54 | ABID97_RS00325 | | efflux RND transporter permease subunit | low | > 91 |
| Caulobacter crescentus NA1000 | 0.29 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.67 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.29 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.67 | CCNA_00850 | | cation/multidrug efflux pump acrB2 | low | > 67 |
| Bosea sp. OAE506 | 0.29 | ABIE41_RS05635 | | RluA family pseudouridine synthase | 0.63 | ABIE41_RS01595 | | efflux RND transporter permease subunit | low | > 77 |
Not shown: 39 genomes with orthologs for IAI46_03985 only; 8 genomes with orthologs for IAI46_05185 only