Conservation of cofitness between IAI46_03280 and IAI46_05020 in Serratia liquefaciens MT49

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Serratia liquefaciens MT49 1.0 IAI46_03280 DNA polymerase II 1.0 IAI46_05020 endopeptidase La 0.66 16
Cupriavidus basilensis FW507-4G11 0.81 RR42_RS09335 DNA polymerase II 0.67 RR42_RS09030 DNA-binding protein — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.79 Psyr_2361 DNA damage-inducible DNA polymerase II 0.68 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 low > 86
Pseudomonas syringae pv. syringae B728a 0.79 Psyr_2361 DNA damage-inducible DNA polymerase II 0.68 Psyr_1749 ATP-dependent proteinase, Serine peptidase, MEROPS family S16 low > 86
Paraburkholderia bryophila 376MFSha3.1 0.79 H281DRAFT_01369 DNA damage-inducible DNA polymerase II 0.68 H281DRAFT_00898 ATP-dependent proteinase. Serine peptidase. MEROPS family S16 — —
Paraburkholderia graminis OAS925 0.79 ABIE53_004018 DNA polymerase-2 0.66 ABIE53_002117 ATP-dependent Lon protease low > 113
Burkholderia phytofirmans PsJN 0.79 BPHYT_RS23105 DNA polymerase 0.68 BPHYT_RS09460 peptidase — —
Pseudomonas sp. RS175 0.77 PFR28_01299 DNA polymerase II 0.69 PFR28_01230 Lon protease low > 88
Pseudomonas fluorescens FW300-N2E2 0.77 Pf6N2E2_2137 DNA polymerase II (EC 2.7.7.7) 0.69 Pf6N2E2_2216 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Pseudomonas fluorescens FW300-N1B4 0.77 Pf1N1B4_87 DNA polymerase II (EC 2.7.7.7) 0.69 Pf1N1B4_3947 ATP-dependent protease La (EC 3.4.21.53) Type I — —
Pseudomonas fluorescens GW456-L13 0.77 PfGW456L13_2472 DNA polymerase II (EC 2.7.7.7) 0.69 PfGW456L13_2554 ATP-dependent protease La (EC 3.4.21.53) Type I low > 87
Pseudomonas fluorescens FW300-N2E3 0.77 AO353_29350 DNA polymerase II 0.69 AO353_20185 DNA-binding protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.77 AO356_01325 DNA polymerase II 0.69 AO356_01740 DNA-binding protein low > 104
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS13385 DNA polymerase II 0.68 QEN71_RS21975 endopeptidase La low > 153
Rahnella sp. WP5 0.77 EX31_RS03740 DNA polymerase II 0.97 EX31_RS22255 endopeptidase La low > 89
Pseudomonas stutzeri RCH2 0.76 Psest_1519 DNA polymerase elongation subunit (family B) 0.70 Psest_2285 ATP-dependent protease La 0.19 62
Pectobacterium carotovorum WPP14 0.75 HER17_RS02995 DNA polymerase II 0.94 HER17_RS15840 endopeptidase La — —
Pseudomonas simiae WCS417 0.74 PS417_09565 DNA polymerase II 0.68 PS417_17225 DNA-binding protein — —
Pseudomonas sp. S08-1 0.74 OH686_16850 DNA polymerase II 0.68 OH686_03635 endopeptidase La low > 80
Pseudomonas fluorescens SBW25 0.73 PFLU_RS10185 DNA polymerase II 0.68 PFLU_RS19160 endopeptidase La low > 109
Pseudomonas fluorescens SBW25-INTG 0.73 PFLU_RS10185 DNA polymerase II 0.68 PFLU_RS19160 endopeptidase La low > 109
Dickeya dianthicola 67-19 0.73 HGI48_RS18165 DNA polymerase II 0.94 HGI48_RS05695 endopeptidase La low > 71
Dickeya dianthicola ME23 0.73 DZA65_RS19305 DNA polymerase II 0.94 DZA65_RS06020 endopeptidase La low > 75
Dickeya dadantii 3937 0.73 DDA3937_RS18230 DNA polymerase II 0.94 DDA3937_RS05650 endopeptidase La low > 74
Pseudomonas putida KT2440 0.73 PP_2393 DNA polymerase II 0.68 PP_2302 DNA-binding, ATP-dependent protease low > 96
Erwinia tracheiphila SCR3 0.72 LU632_RS02810 polB DNA polymerase II 0.93 LU632_RS18335 lon endopeptidase La — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF182 DNA polymerase II (EC 2.7.7.7) 0.93 GFF4355 ATP-dependent protease La (EC 3.4.21.53) Type I low > 78
Pantoea sp. MT58 0.71 IAI47_16050 DNA polymerase II 0.92 IAI47_14645 endopeptidase La — —
Escherichia coli ECOR38 0.71 HEPCGN_08785 polB DNA polymerase II 0.93 HEPCGN_06935 lon_P403L Lon protease low > 85
Escherichia coli BL21 0.71 ECD_00062 DNA polymerase II 0.93 ECD_00391 DNA-binding ATP-dependent protease La low > 60
Escherichia coli BW25113 0.71 b0060 polB DNA polymerase II (NCBI) 0.93 b0439 lon DNA-binding ATP-dependent protease La (NCBI) low > 76
Enterobacter sp. TBS_079 0.71 MPMX20_00754 DNA polymerase II 0.92 MPMX20_01030 Lon protease low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_03598 DNA polymerase II 0.93 OHPLBJKB_03234 Lon protease low > 73
Escherichia coli ECRC98 0.71 JDDGAC_14390 polB DNA polymerase II 0.93 JDDGAC_11975 Lon protease — —
Escherichia coli ECRC102 0.71 NIAGMN_08645 polB DNA polymerase II 0.93 NIAGMN_06375 Lon protease — —
Escherichia coli ECRC99 0.71 KEDOAH_17360 polB DNA polymerase II 0.93 KEDOAH_19645 Lon protease — —
Escherichia fergusonii Becca 0.71 EFB2_03985 DNA polymerase II 0.93 EFB2_03618 Lon protease low > 86
Escherichia coli ECRC101 0.71 MCAODC_01310 polB DNA polymerase II 0.93 MCAODC_27545 Lon protease — —
Escherichia coli ECRC101 0.71 OKFHMN_10795 polB DNA polymerase II 0.93 OKFHMN_08320 Lon protease — —
Escherichia coli ECOR27 0.71 NOLOHH_03140 polB DNA polymerase II 0.93 NOLOHH_01255 lon_P403L Lon protease low > 57
Escherichia coli ECRC62 0.71 BNILDI_08465 polB DNA polymerase II 0.93 BNILDI_22670 lon_P403L Lon protease — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS00320 DNA polymerase II 0.93 ECOLIN_RS02635 endopeptidase La low > 52
Enterobacter asburiae PDN3 0.70 EX28DRAFT_3652 DNA polymerase elongation subunit (family B) 0.92 EX28DRAFT_2531 endopeptidase La low > 76
Klebsiella michiganensis M5al 0.69 BWI76_RS04575 DNA polymerase II 0.94 BWI76_RS06535 endopeptidase La low > 92
Herbaspirillum seropedicae SmR1 0.67 HSERO_RS12200 DNA polymerase II 0.68 HSERO_RS12905 peptidase — —
Variovorax sp. SCN45 0.58 GFF7213 DNA polymerase II (EC 2.7.7.7) 0.64 GFF487 ATP-dependent protease La (EC 3.4.21.53) Type I low > 127
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_06130 DNA polymerase II 0.83 CSW01_09605 endopeptidase La low > 62
Alteromonas macleodii MIT1002 0.40 MIT1002_03358 DNA polymerase II 0.79 MIT1002_02757 Lon protease low > 70
Shewanella loihica PV-4 0.39 Shew_2482 DNA polymerase II (RefSeq) 0.82 Shew_2506 ATP-dependent protease La (RefSeq) — —
Shewanella sp. ANA-3 0.39 Shewana3_2629 DNA polymerase II (RefSeq) 0.82 Shewana3_2659 Lon-A peptidase (RefSeq) — —
Shewanella amazonensis SB2B 0.39 Sama_1250 DNA polymerase II (RefSeq) 0.81 Sama_1226 endopeptidase La (RefSeq) low > 62
Shewanella oneidensis MR-1 0.38 SO1820 polB DNA polymerase II (NCBI ptt file) 0.82 SO1796 lon ATP-dependent protease La (NCBI ptt file) low > 76

Not shown: 2 genomes with orthologs for IAI46_03280 only; 46 genomes with orthologs for IAI46_05020 only