Conservation of cofitness between HSERO_RS07145 and HSERO_RS23825 in Herbaspirillum seropedicae SmR1

50 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07145 hypothetical protein 1.0 HSERO_RS23825 hypothetical protein 0.34 16
Dechlorosoma suillum PS 0.27 Dsui_3403 TIGR02099 family protein 0.21 Dsui_2868 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain protein — —
Acidovorax sp. GW101-3H11 0.25 Ac3H11_1208 FIG005080: Possible exported protein 0.14 Ac3H11_579 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 79
Variovorax sp. SCN45 0.24 GFF5444 FIG005080: Possible exported protein 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 127
Variovorax sp. OAS795 0.22 ABID97_RS02005 YhdP family protein 0.12 ABID97_RS15455 FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 91
Ralstonia sp. UNC404CL21Col 0.21 ABZR87_RS01095 YhdP family protein 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Ralstonia solanacearum GMI1000 0.21 RS_RS13305 TIGR02099 family protein 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Paraburkholderia graminis OAS925 0.21 ABIE53_000853 uncharacterized protein (TIGR02099 family) 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.21 H281DRAFT_04690 TIGR02099 family protein 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein low > 103
Ralstonia solanacearum PSI07 0.21 RPSI07_RS11860 TIGR02099 family protein 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 81
Ralstonia solanacearum UW163 0.21 UW163_RS08180 TIGR02099 family protein 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Ralstonia solanacearum IBSBF1503 0.21 RALBFv3_RS05445 TIGR02099 family protein 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 76
Paraburkholderia sabiae LMG 24235 0.21 QEN71_RS26545 AsmA-like C-terminal region-containing protein 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 153
Burkholderia phytofirmans PsJN 0.20 BPHYT_RS03550 hypothetical protein 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 109
Cupriavidus basilensis FW507-4G11 0.19 RR42_RS05885 hypothetical protein 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 128
Pseudomonas syringae pv. syringae B728a ΔmexB 0.08 Psyr_4158 conserved hypothetical protein 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Pseudomonas syringae pv. syringae B728a 0.08 Psyr_4158 conserved hypothetical protein 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 low > 86
Serratia liquefaciens MT49 0.08 IAI46_22695 AsmA2 domain-containing protein YhdP 0.18 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Klebsiella michiganensis M5al 0.07 BWI76_RS25475 TIGR02099 family protein 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.07 GFF2139 FIG005080: Possible exported protein 0.20 GFF1945 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 78
Vibrio cholerae E7946 ATCC 55056 0.07 CSW01_02210 DUF3971 domain-containing protein 0.18 CSW01_10535 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 62
Enterobacter sp. TBS_079 0.07 MPMX20_04152 hypothetical protein 0.17 MPMX20_03259 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 85
Dickeya dadantii 3937 0.07 DDA3937_RS01455 AsmA2 domain-containing protein YhdP 0.16 DDA3937_RS14515 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 74
Pseudomonas sp. S08-1 0.07 OH686_08590 Possible exported protein 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase — —
Dickeya dianthicola ME23 0.07 DZA65_RS01435 AsmA2 domain-containing protein 0.16 DZA65_RS15420 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Dickeya dianthicola 67-19 0.07 HGI48_RS01375 AsmA2 domain-containing protein YhdP 0.16 HGI48_RS14485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 71
Escherichia coli BL21 0.07 ECD_03105 DUF3971-AsmA2 domains protein 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme low > 61
Enterobacter asburiae PDN3 0.07 EX28DRAFT_3296 TIGR02099 family protein 0.18 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 76
Escherichia coli ECOR38 0.07 HEPCGN_16615 yhdP AsmA2 domain-containing protein YhdP 0.20 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli ECRC99 0.07 KEDOAH_10400 yhdP AsmA2 domain-containing protein YhdP 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECRC102 0.07 NIAGMN_15510 yhdP AsmA2 domain-containing protein YhdP 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC — —
Escherichia coli ECRC98 0.07 JDDGAC_21375 yhdP AsmA2 domain-containing protein YhdP 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 86
Escherichia coli ECRC101 0.07 MCAODC_08270 yhdP AsmA2 domain-containing protein YhdP 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 87
Escherichia coli ECRC100 0.07 OKFHMN_17750 yhdP AsmA2 domain-containing protein YhdP 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 80
Pseudomonas putida KT2440 0.07 PP_0938 conserved protein of unknown function 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase low > 96
Escherichia fergusonii Becca 0.07 EFB2_00585 hypothetical protein 0.20 EFB2_01534 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.07 OHPLBJKB_00459 hypothetical protein 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 73
Escherichia coli ECRC62 0.07 BNILDI_01985 yhdP AsmA2 domain-containing protein YhdP 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli ECOR27 0.07 NOLOHH_09535 yhdP AsmA2 domain-containing protein YhdP 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Escherichia coli BW25113 0.07 b4472 yhdP conserved membrane protein, predicted transporter (NCBI) 0.20 b2324 b2324 putative peptidase (VIMSS) low > 76
Escherichia coli Nissle 1917 0.07 ECOLIN_RS18600 AsmA2 domain-containing protein YhdP 0.20 ECOLIN_RS13465 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 55
Rahnella sp. WP5 0.06 EX31_RS12260 AsmA2 domain-containing protein 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 89
Pseudomonas stutzeri RCH2 0.06 Psest_3322 TIGR02099 family protein 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain low > 67
Pseudomonas fluorescens FW300-N2E2 0.06 Pf6N2E2_3282 FIG005080: Possible exported protein 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 103
Pseudomonas fluorescens GW456-L13 0.06 PfGW456L13_5028 FIG005080: Possible exported protein 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 87
Pseudomonas fluorescens FW300-N2E3 0.06 AO353_05225 hypothetical protein 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 101
Pseudomonas fluorescens FW300-N2C3 0.06 AO356_07105 hypothetical protein 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase low > 104
Pectobacterium carotovorum WPP14 0.06 HER17_RS20145 AsmA2 domain-containing protein YhdP 0.18 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC low > 75
Pseudomonas sp. RS175 0.06 PFR28_00159 hypothetical protein 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC low > 88
Shewanella sp. ANA-3 0.06 Shewana3_3643 hypothetical protein (RefSeq) 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) low > 73
Pseudomonas fluorescens FW300-N1B4 0.05 Pf1N1B4_1094 FIG005080: Possible exported protein 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC low > 87

Not shown: 6 genomes with orthologs for HSERO_RS07145 only; 14 genomes with orthologs for HSERO_RS23825 only