Conservation of cofitness between HSERO_RS21530 and HSERO_RS20970 in Herbaspirillum seropedicae SmR1

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS21530 cytochrome C550 1.0 HSERO_RS20970 NDP-N-acetyl-D-mannosaminuronate dehydrogenase 0.63 14
Ralstonia solanacearum PSI07 0.55 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase 0.20 RPSI07_RS04505 UDP-N-acetyl-D-mannosamine dehydrogenase low > 81
Burkholderia phytofirmans PsJN 0.55 BPHYT_RS02415 cytochrome C550 0.75 BPHYT_RS23345 nucleotide sugar dehydrogenase low > 109
Ralstonia solanacearum GMI1000 0.54 RS_RS01610 D-alanyl-D-alanine carboxypeptidase 0.20 RS_RS22025 UDP-N-acetyl-D-mannosamine dehydrogenase low > 80
Ralstonia solanacearum UW163 0.54 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase 0.21 UW163_RS20035 UDP-N-acetyl-D-mannosamine dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase 0.21 RALBFv3_RS19095 UDP-N-acetyl-D-mannosamine dehydrogenase low > 76
Variovorax sp. OAS795 0.49 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein 0.57 ABID97_RS02195 nucleotide sugar dehydrogenase 0.63 17
Castellaniella sp019104865 MT123 0.48 ABCV34_RS13340 D-alanyl-D-alanine carboxypeptidase family protein 0.74 ABCV34_RS09370 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB — —
Marinobacter adhaerens HP15 0.42 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase 0.70 HP15_p187g68 UDP-glucose/GDP-mannose dehydrogenase family protein — —
Pseudomonas fluorescens FW300-N2C3 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase 0.28 AO356_03420 UDP-N-acetyl-D-glucosamine dehydrogenase low > 104
Pseudomonas fluorescens GW456-L13 0.42 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.19 PfGW456L13_3996 UDP-glucose dehydrogenase (EC 1.1.1.22) — —
Pseudomonas fluorescens FW300-N2E2 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.76 Pf6N2E2_2513 UDP-glucose dehydrogenase (EC 1.1.1.22) low > 103
Lysobacter sp. OAE881 0.42 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein 0.68 ABIE51_RS07835 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB low > 62
Dyella japonica UNC79MFTsu3.2 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein 0.68 ABZR86_RS18500 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS06490 D-alanyl-D-alanine carboxypeptidase 0.67 LRK54_RS17385 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB low > 59
Rhodanobacter denitrificans MT42 0.41 LRK55_RS06235 D-alanyl-D-alanine carboxypeptidase family protein 0.68 LRK55_RS17610 Vi polysaccharide biosynthesis UDP-N-acetylglucosamine C-6 dehydrogenase TviB — —
Rhodanobacter sp. FW510-T8 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase 0.65 OKGIIK_11915 wecC Vi polysaccharide biosynthesis protein VipA/TviB — —
Rahnella sp. WP5 0.38 EX31_RS07145 serine hydrolase 0.19 EX31_RS15070 UDP-N-acetyl-D-mannosamine dehydrogenase low > 89
Dickeya dianthicola 67-19 0.38 HGI48_RS09435 serine hydrolase 0.18 HGI48_RS20195 UDP-N-acetyl-D-mannosamine dehydrogenase low > 71
Escherichia coli ECOR27 0.37 NOLOHH_22410 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 NOLOHH_06700 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Escherichia coli ECRC101 0.37 MCAODC_25255 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 MCAODC_05070 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 87
Escherichia coli BW25113 0.37 b0839 dacC D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 6a) (NCBI) 0.18 b3787 rffD UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase (NCBI) low > 76
Escherichia coli ECRC99 0.37 KEDOAH_21870 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 KEDOAH_13585 wecC UDP-N-acetyl-D-mannosamine dehydrogenase — —
Escherichia coli ECOR38 0.37 HEPCGN_01990 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 HEPCGN_13275 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 87
Escherichia coli ECRC98 0.37 JDDGAC_09675 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 JDDGAC_18190 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 86
Escherichia coli ECRC100 0.37 OKFHMN_06040 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 OKFHMN_14565 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 80
Escherichia coli BL21 0.37 ECD_00806 D-alanyl-D-alanine carboxypeptidase; penicillin-binding protein 6a 0.18 ECD_03665 UDP-N-acetyl-D-mannosaminuronic acid dehydrogenase low > 61
Escherichia coli ECRC62 0.37 BNILDI_20670 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 BNILDI_04825 wecC UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_02871 D-alanyl-D-alanine carboxypeptidase DacC 0.18 OHPLBJKB_04267 UDP-N-acetyl-D-mannosamine dehydrogenase low > 73
Escherichia coli ECRC102 0.37 NIAGMN_04085 dacC serine-type D-Ala-D-Ala carboxypeptidase 0.18 NIAGMN_12320 wecC UDP-N-acetyl-D-mannosamine dehydrogenase — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS04460 serine-type D-Ala-D-Ala carboxypeptidase 0.18 ECOLIN_RS21740 UDP-N-acetyl-D-mannosamine dehydrogenase — —
Dickeya dadantii 3937 0.37 DDA3937_RS09420 serine hydrolase 0.18 DDA3937_RS20050 UDP-N-acetyl-D-mannosamine dehydrogenase low > 74
Escherichia fergusonii Becca 0.37 EFB2_03267 D-alanyl-D-alanine carboxypeptidase DacC 0.18 EFB2_04852 UDP-N-acetyl-D-mannosamine dehydrogenase low > 86
Acinetobacter radioresistens SK82 0.37 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA 0.78 MPMX26_00050 UDP-N-acetyl-D-glucosamine 6-dehydrogenase low > 36
Dickeya dianthicola ME23 0.37 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase 0.18 DZA65_RS21240 UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Enterobacter asburiae PDN3 0.36 EX28DRAFT_2127 D-alanyl-D-alanine carboxypeptidase 0.19 EX28DRAFT_4457 nucleotide sugar dehydrogenase 0.55 20
Pectobacterium carotovorum WPP14 0.36 HER17_RS12545 serine hydrolase 0.18 HER17_RS01160 UDP-N-acetyl-D-mannosamine dehydrogenase low > 75
Enterobacter sp. TBS_079 0.36 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC 0.19 MPMX20_04486 UDP-N-acetyl-D-mannosamine dehydrogenase low > 85
Shewanella amazonensis SB2B 0.36 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) 0.66 Sama_2260 UDP-glucose/GDP-mannose dehydrogenase (RefSeq) — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.907.1 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.58 Xcc-8004.2607.1 Polysaccharide biosynthetic protein low > 74
Shewanella oneidensis MR-1 0.35 SO1164 dacA-1 D-alanyl-D-alanine carboxypeptidase (NCBI ptt file) 0.75 SO3190 polysaccharide biosynthesis protein (NCBI ptt file) — —
Serratia liquefaciens MT49 0.35 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA 0.20 IAI46_00605 UDP-N-acetyl-D-mannosamine dehydrogenase low > 86
Azospirillum brasilense Sp245 0.35 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase 0.53 AZOBR_RS33565 UDP-N-acetyl-D-galactosamine dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF744 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) 0.18 GFF2886 UDP-glucose dehydrogenase (EC 1.1.1.22) low > 78
Sphingomonas koreensis DSMZ 15582 0.34 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase 0.46 Ga0059261_3106 nucleotide sugar dehydrogenase — —
Bosea sp. OAE506 0.31 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein 0.27 ABIE41_RS14415 nucleotide sugar dehydrogenase — —
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase 0.47 AMB_RS00730 nucleotide sugar dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.29 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC 0.70 PGA1_262p02300 UDP-glucose/GDP-mannose dehydrogenase — —
Sinorhizobium meliloti 1021 0.25 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein 0.26 SM_b21256 nucleotide sugar oxidase — —

Not shown: 34 genomes with orthologs for HSERO_RS21530 only; 7 genomes with orthologs for HSERO_RS20970 only