| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS01325 | | cation/multidrug efflux protein | 1.0 | HSERO_RS15940 | | peptide ABC transporter substrate-binding protein | 0.45 | 2 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.73 | H281DRAFT_05197 | | Multidrug efflux pump subunit AcrB | 0.43 | H281DRAFT_01032 | | peptide/nickel transport system ATP-binding protein | low | > 103 |
| Paraburkholderia sabiae LMG 24235 | 0.71 | QEN71_RS07190 | | efflux RND transporter permease subunit | 0.44 | QEN71_RS31475 | | ABC transporter ATP-binding protein | low | > 153 |
| Burkholderia phytofirmans PsJN | 0.71 | BPHYT_RS11375 | | acriflavin resistance protein | 0.40 | BPHYT_RS18675 | | peptide ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.50 | PFLU_RS06185 | | efflux RND transporter permease subunit | 0.39 | PFLU_RS04090 | | ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.50 | PFLU_RS06185 | | efflux RND transporter permease subunit | 0.39 | PFLU_RS04090 | | ABC transporter ATP-binding protein | low | > 109 |
| Pseudomonas simiae WCS417 | 0.50 | PS417_06115 | | multidrug transporter AcrB | 0.39 | PS417_04050 | | peptide ABC transporter ATP-binding protein | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_4730 | | RND efflux transporter | 0.39 | PfGW456L13_5057 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.50 | AO353_16365 | | multidrug transporter AcrB | 0.39 | AO353_05405 | | peptide ABC transporter ATP-binding protein | low | > 101 |
| Pseudomonas sp. S08-1 | 0.49 | OH686_06740 | | Multidrug efflux system, inner membrane proton/drug antiporter (RND type) | 0.39 | OH686_08715 | | Dipeptide ABC transporter, ATP-binding protein DppD | low | > 80 |
| Pseudomonas fluorescens FW300-N1B4 | 0.49 | Pf1N1B4_3063 | | RND efflux transporter | 0.39 | Pf1N1B4_1126 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.49 | Pf6N2E2_3091 | | RND efflux transporter | 0.63 | Pf6N2E2_1812 | | peptide ABC transporter, ATP-binding protein | low | > 103 |
| Pseudomonas fluorescens FW300-N2C3 | 0.49 | AO356_06130 | | multidrug transporter AcrB | 0.60 | AO356_29385 | | peptide ABC transporter substrate-binding protein | low | > 104 |
| Pseudomonas putida KT2440 | 0.49 | PP_1517 | | RND efflux transporter | 0.40 | PP_0879 | | dipeptide ABC transporter - putative ATP binding subunit | 0.14 | 81 |
| Pseudomonas sp. RS175 | 0.49 | PFR28_00379 | | Cobalt-zinc-cadmium resistance protein CzcA | 0.61 | PFR28_00049 | | Oligopeptide transport ATP-binding protein OppD | low | > 88 |
| Azospirillum sp. SherDot2 | 0.48 | MPMX19_05260 | | Cobalt-zinc-cadmium resistance protein CzcA | 0.44 | MPMX19_04416 | | Dipeptide transport ATP-binding protein DppD | low | > 112 |
| Cupriavidus basilensis FW507-4G11 | 0.46 | RR42_RS07915 | | multidrug transporter AcrB | 0.43 | RR42_RS11230 | | peptide ABC transporter ATP-binding protein | low | > 128 |
| Ralstonia solanacearum PSI07 | 0.46 | RPSI07_RS16100 | | AcrB/AcrD/AcrF family protein | 0.71 | RPSI07_RS03260 | | ABC transporter ATP-binding protein | low | > 81 |
| Rhodopseudomonas palustris CGA009 | 0.44 | TX73_022880 | | efflux RND transporter permease subunit | 0.45 | TX73_007420 | | ABC transporter ATP-binding protein | low | > 86 |
| Acidovorax sp. GW101-3H11 | 0.43 | Ac3H11_933 | | Probable transmembrane drug efflux protein | 0.43 | Ac3H11_4825 | | Dipeptide transport ATP-binding protein DppD (TC 3.A.1.5.2) | low | > 79 |
| Variovorax sp. SCN45 | 0.43 | GFF493 | | RND efflux system, inner membrane transporter | 0.46 | GFF7020 | | ABC transporter, ATP-binding protein (cluster 5, nickel/peptides/opines) | low | > 127 |
| Variovorax sp. OAS795 | 0.43 | ABID97_RS17615 | | efflux RND transporter permease subunit | 0.45 | ABID97_RS04460 | | ABC transporter ATP-binding protein | low | > 91 |
| Pseudomonas syringae pv. syringae B728a | 0.42 | Psyr_0346 | | Acriflavin resistance protein | 0.60 | Psyr_2264 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.42 | Psyr_0346 | | Acriflavin resistance protein | 0.60 | Psyr_2264 | | Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal | low | > 86 |
| Rhizobium sp. OAE497 | 0.42 | ABIE40_RS17045 | | efflux RND transporter permease subunit | 0.44 | ABIE40_RS25755 | | ABC transporter ATP-binding protein | low | > 107 |
| Pectobacterium carotovorum WPP14 | 0.38 | HER17_RS07500 | | efflux RND transporter permease subunit | 0.40 | HER17_RS00235 | | dipeptide ABC transporter ATP-binding protein | 0.62 | 21 |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS18635 | | efflux RND transporter permease subunit | 0.41 | ABIE41_RS02275 | | ABC transporter ATP-binding protein | low | > 77 |
| Dickeya dianthicola ME23 | 0.38 | DZA65_RS08250 | | efflux RND transporter permease subunit | 0.66 | DZA65_RS02330 | | ABC transporter ATP-binding protein | low | > 75 |
| Rahnella sp. WP5 | 0.38 | EX31_RS17700 | | efflux RND transporter permease subunit | 0.43 | EX31_RS09170 | | ABC transporter ATP-binding protein | low | > 89 |
| Dickeya dadantii 3937 | 0.37 | DDA3937_RS04730 | | efflux RND transporter permease subunit | 0.66 | DDA3937_RS02240 | | ATP-binding cassette domain-containing protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.35 | HGI48_RS07915 | | efflux RND transporter permease subunit | 0.66 | HGI48_RS02195 | | ABC transporter ATP-binding protein | low | > 71 |
| Enterobacter sp. TBS_079 | 0.35 | MPMX20_02160 | | Nickel and cobalt resistance protein CnrA | 0.44 | MPMX20_00903 | | Oligopeptide transport ATP-binding protein OppD | low | > 85 |
| Pantoea sp. MT58 | 0.35 | IAI47_21725 | | efflux RND transporter permease subunit | 0.41 | IAI47_09085 | | ABC transporter ATP-binding protein | low | > 76 |
| Enterobacter asburiae PDN3 | 0.35 | EX28DRAFT_1393 | | Cation/multidrug efflux pump | 0.46 | EX28DRAFT_2675 | | oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain | low | > 76 |
| Azospirillum brasilense Sp245 | 0.34 | AZOBR_RS32765 | | multidrug transporter | 0.54 | AZOBR_RS26235 | | peptide ABC transporter substrate-binding protein | low | > 97 |
| Vibrio cholerae E7946 ATCC 55056 | 0.27 | CSW01_08410 | | AcrB/AcrD/AcrF family protein | 0.42 | CSW01_05560 | | ABC transporter ATP-binding protein | low | > 62 |
| Shewanella sp. ANA-3 | 0.26 | Shewana3_3849 | | acriflavin resistance protein (RefSeq) | 0.31 | Shewana3_2653 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.25 | Shew_0466 | | acriflavin resistance protein (RefSeq) | 0.31 | Shew_2501 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | — | — |
| Alteromonas macleodii MIT1002 | 0.25 | MIT1002_01561 | | Swarming motility protein SwrC | 0.30 | MIT1002_01138 | | putative D,D-dipeptide transport ATP-binding protein DdpD | — | — |
| Shewanella amazonensis SB2B | 0.25 | Sama_0675 | | AcrB/AcrD/AcrF family transporter (RefSeq) | 0.30 | Sama_1232 | | peptide ABC transporter, ATP-binding protein (RefSeq) | low | > 62 |
| Dinoroseobacter shibae DFL-12 | 0.24 | Dshi_1262 | | acriflavin resistance protein (RefSeq) | 0.40 | Dshi_3796 | | oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq) | low | > 64 |
| Shewanella oneidensis MR-1 | 0.15 | SO3279 | | AcrB/AcrD/AcrF family protein (NCBI ptt file) | 0.31 | SO1802 | sapD | peptide ABC transporter, ATP-binding protein (NCBI ptt file) | — | — |
Not shown: 27 genomes with orthologs for HSERO_RS01325 only; 16 genomes with orthologs for HSERO_RS15940 only