Conservation of cofitness between HSERO_RS08590 and HSERO_RS12925 in Herbaspirillum seropedicae SmR1

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS12925 catabolite repression CreA protein 0.36 3
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS08605 pseudouridine synthase 0.55 ABZR87_RS12270 CreA family protein low > 80
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12605 16S rRNA pseudouridine(516) synthase 0.55 RALBFv3_RS00715 crea protein low > 76
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.59 RR42_RS28965 hypothetical protein low > 128
Ralstonia solanacearum UW163 0.48 UW163_RS00960 16S rRNA pseudouridine(516) synthase 0.55 UW163_RS14045 crea protein — —
Ralstonia solanacearum PSI07 0.48 RPSI07_RS20655 16S rRNA pseudouridine(516) synthase 0.55 RPSI07_RS16785 hypothetical protein low > 81
Ralstonia solanacearum GMI1000 0.48 RS_RS03390 16S rRNA pseudouridine(516) synthase 0.58 RS_RS07400 hypothetical protein low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03150 16S rRNA pseudouridine(516) synthase 0.56 QEN71_RS04425 CreA family protein 0.32 135
Paraburkholderia graminis OAS925 0.46 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.54 ABIE53_003071 CreA protein low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.53 H281DRAFT_04326 CreA protein low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15560 pseudouridine synthase 0.53 BPHYT_RS14555 CreA family protein low > 109
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.57 ABID97_RS12385 CreA family protein low > 91
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.59 GFF802 Conserved uncharacterized protein CreA low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5277 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.57 GFF2638 Conserved uncharacterized protein CreA low > 90
Magnetospirillum magneticum AMB-1 0.30 AMB_RS12445 rRNA pseudouridine synthase 0.43 AMB_RS22685 hypothetical protein low > 64
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.26 Shewana3_2415 CreA family protein (RefSeq) — —
Escherichia coli ECRC62 0.26 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 BNILDI_08125 creA protein CreA low > 75
Escherichia coli ECRC101 0.26 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 MCAODC_01660 creA protein CreA low > 87
Escherichia coli ECRC102 0.26 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 NIAGMN_08995 creA protein CreA — —
Escherichia coli ECRC98 0.26 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 JDDGAC_14740 creA protein CreA low > 86
Escherichia coli ECRC99 0.26 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 KEDOAH_17010 creA protein CreA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 0.47 OHPLBJKB_03664 hypothetical protein low > 73
Escherichia coli BL21 0.26 ECD_02113 16S rRNA pseudouridine(516) synthase 0.47 ECD_04273 putative periplasmic protein low > 61
Escherichia coli ECOR38 0.26 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 HEPCGN_09150 creA protein CreA low > 87
Escherichia coli Nissle 1917 0.26 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.47 ECOLIN_RS25235 protein CreA — —
Escherichia fergusonii Becca 0.26 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.47 EFB2_04047 hypothetical protein low > 86
Escherichia coli ECOR27 0.26 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 NOLOHH_03475 creA protein CreA low > 75
Escherichia coli ECRC100 0.26 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 OKFHMN_11145 creA protein CreA low > 80
Escherichia coli BW25113 0.26 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.47 b4397 creA hypothetical protein (NCBI) low > 76
Rahnella sp. WP5 0.26 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.47 EX31_RS03960 protein CreA low > 89
Dickeya dadantii 3937 0.26 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.48 DDA3937_RS18430 protein CreA low > 74
Pantoea sp. MT58 0.26 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.47 IAI47_16235 protein CreA low > 76
Pectobacterium carotovorum WPP14 0.26 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.49 HER17_RS02775 protein CreA low > 75
Dickeya dianthicola ME23 0.26 DZA65_RS09500 16S rRNA pseudouridine(516) synthase RsuA 0.48 DZA65_RS19500 protein CreA low > 75
Dickeya dianthicola 67-19 0.25 HGI48_RS09200 16S rRNA pseudouridine(516) synthase RsuA 0.48 HGI48_RS18360 protein CreA low > 71
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.45 IAI46_03010 protein CreA low > 86
Enterobacter sp. TBS_079 0.25 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.47 MPMX20_00704 hypothetical protein low > 85
Klebsiella michiganensis M5al 0.24 BWI76_RS19810 16S rRNA pseudouridine(516) synthase 0.49 BWI76_RS04210 hypothetical protein — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0378 pseudouridine synthase 0.48 EX28DRAFT_3607 Uncharacterized protein conserved in bacteria low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.48 GFF1065 Conserved uncharacterized protein CreA low > 78
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.21 CSW01_18165 hypothetical protein low > 62
Rhizobium sp. OAE497 0.21 ABIE40_RS15330 pseudouridine synthase 0.23 ABIE40_RS11755 CreA family protein low > 107
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.56 Pf1N1B4_2801 Conserved uncharacterized protein CreA low > 87
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_17535 16S rRNA pseudouridine(516) synthase 0.55 AO353_14120 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.57 AO356_15820 hypothetical protein low > 104
Pseudomonas syringae pv. syringae B728a ΔmexB 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.56 Psyr_0705 CreA low > 86
Pseudomonas syringae pv. syringae B728a 0.19 Psyr_3981 ribosomal small subunit pseudouridine synthase A 0.56 Psyr_0705 CreA low > 86
Pseudomonas stutzeri RCH2 0.19 Psest_3049 pseudouridine synthase 0.53 Psest_3383 Uncharacterized protein conserved in bacteria low > 67
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.56 PFR28_03768 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.57 Pf6N2E2_5104 Conserved uncharacterized protein CreA low > 103
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.57 PP_0692 conserved protein of unknown function low > 96
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.57 OH686_16310 Conserved uncharacterized protein CreA low > 80
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_4535 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.56 PfGW456L13_1473 Conserved uncharacterized protein CreA low > 87
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.55 PS417_23540 CreA low > 88
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.56 PFLU_RS25355 CreA family protein low > 109
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.56 PFLU_RS25355 CreA family protein low > 109

Not shown: 16 genomes with orthologs for HSERO_RS08590 only; 10 genomes with orthologs for HSERO_RS12925 only