Conservation of cofitness between HSERO_RS08590 and HSERO_RS12655 in Herbaspirillum seropedicae SmR1

39 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS12655 pirin 0.32 9
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS08605 pseudouridine synthase 0.52 ABZR87_RS06870 pirin family protein low > 80
Cupriavidus basilensis FW507-4G11 0.48 RR42_RS15880 pseudouridine synthase 0.50 RR42_RS01935 pirin low > 128
Ralstonia solanacearum UW163 0.48 UW163_RS00960 16S rRNA pseudouridine(516) synthase 0.52 UW163_RS02565 pirin family protein — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12605 16S rRNA pseudouridine(516) synthase 0.52 RALBFv3_RS11015 pirin family protein low > 76
Ralstonia solanacearum PSI07 0.48 RPSI07_RS20655 16S rRNA pseudouridine(516) synthase 0.52 RPSI07_RS22290 pirin family protein low > 81
Ralstonia solanacearum GMI1000 0.48 RS_RS03390 16S rRNA pseudouridine(516) synthase 0.53 RS_RS01855 pirin family protein low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03150 16S rRNA pseudouridine(516) synthase 0.53 QEN71_RS02725 pirin family protein low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.51 ABIE53_003369 redox-sensitive bicupin YhaK (pirin superfamily) low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.51 H281DRAFT_04132 hypothetical protein low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15560 pseudouridine synthase 0.52 BPHYT_RS15980 pirin low > 109
Acinetobacter radioresistens SK82 0.44 MPMX26_01203 Ribosomal small subunit pseudouridine synthase A 0.29 MPMX26_00075 hypothetical protein low > 36
Variovorax sp. OAS795 0.43 ABID97_RS09900 16S rRNA pseudouridine(516) synthase 0.47 ABID97_RS17995 pirin family protein low > 91
Variovorax sp. SCN45 0.42 GFF3076 SSU rRNA pseudouridine(516) synthase (EC 5.4.99.19) 0.48 GFF586 Pirin low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.37 GFF5277 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.38 GFF1940 Pirin-related protein low > 90
Caulobacter crescentus NA1000 Δfur 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.40 CCNA_03282 pirin low > 67
Caulobacter crescentus NA1000 0.27 CCNA_01915 ribosomal small subunit pseudouridine synthase A 0.40 CCNA_03282 pirin low > 66
Rhodanobacter denitrificans MT42 0.27 LRK55_RS15690 pseudouridine synthase 0.42 LRK55_RS14505 pirin family protein low > 63
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_09050 Pseudouridine synthase 0.41 OKGIIK_03615 yhaK Pirin low > 52
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS15935 rRNA pseudouridine synthase 0.42 LRK54_RS14790 pirin family protein low > 59
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.25 Shewana3_0061 pirin domain-containing protein (RefSeq) low > 73
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.27 IAI46_14920 pirin family protein low > 86
Shewanella amazonensis SB2B 0.25 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.26 Sama_3541 pirin-like protein (RefSeq) low > 62
Xanthomonas campestris pv. campestris strain 8004 0.25 Xcc-8004.4611.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.43 Xcc-8004.1761.1 Pirin-related protein low > 74
Marinobacter adhaerens HP15 0.24 HP15_3359 pseudouridine synthase, Rsu 0.41 HP15_1408 pirin domain protein low > 73
Lysobacter sp. OAE881 0.24 ABIE51_RS18480 pseudouridine synthase 0.45 ABIE51_RS14340 pirin family protein low > 62
Dyella japonica UNC79MFTsu3.2 0.23 ABZR86_RS00325 16S rRNA pseudouridine(516) synthase 0.42 ABZR86_RS00550 pirin family protein low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.22 A4249_RS11350 pseudouridine synthase 0.40 A4249_RS13210 pirin family protein low > 48
Rhizobium sp. OAE497 0.21 ABIE40_RS15330 pseudouridine synthase 0.41 ABIE40_RS03920 pirin family protein low > 107
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.41 Pf1N1B4_3693 Pirin low > 87
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_17535 16S rRNA pseudouridine(516) synthase 0.40 AO353_01770 pirin low > 101
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.39 AO356_19755 pirin low > 104
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.41 PP_4177 conserved protein of unknown function low > 96
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.40 PFR28_03084 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.40 Pf6N2E2_5867 Pirin low > 103
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.40 OH686_00425 Pirin low > 80
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_4535 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.41 PfGW456L13_4256 Pirin low > 87
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.41 PS417_08955 pimeloyl-CoA dehydrogenase low > 88
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.39 PFLU_RS09015 pirin family protein low > 109
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.39 PFLU_RS09015 pirin family protein low > 109

Not shown: 32 genomes with orthologs for HSERO_RS08590 only; 14 genomes with orthologs for HSERO_RS12655 only