Conservation of cofitness between HSERO_RS08590 and HSERO_RS12550 in Herbaspirillum seropedicae SmR1

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS08590 pseudouridine synthase 1.0 HSERO_RS12550 D-lactate dehydrogenase 0.38 1
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS08605 pseudouridine synthase 0.51 ABZR87_RS03505 2-hydroxyacid dehydrogenase low > 80
Ralstonia solanacearum UW163 0.48 UW163_RS00960 16S rRNA pseudouridine(516) synthase 0.53 UW163_RS05795 2-hydroxyacid dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.48 RALBFv3_RS12605 16S rRNA pseudouridine(516) synthase 0.53 RALBFv3_RS07830 2-hydroxyacid dehydrogenase 0.28 60
Ralstonia solanacearum PSI07 0.48 RPSI07_RS20655 16S rRNA pseudouridine(516) synthase 0.50 RPSI07_RS09445 2-hydroxyacid dehydrogenase low > 81
Ralstonia solanacearum GMI1000 0.48 RS_RS03390 16S rRNA pseudouridine(516) synthase 0.51 RS_RS15730 2-hydroxyacid dehydrogenase low > 80
Paraburkholderia sabiae LMG 24235 0.47 QEN71_RS03150 16S rRNA pseudouridine(516) synthase 0.51 QEN71_RS26130 2-hydroxyacid dehydrogenase low > 153
Paraburkholderia graminis OAS925 0.46 ABIE53_003276 16S rRNA pseudouridine516 synthase 0.54 ABIE53_006385 D-lactate dehydrogenase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_04053 ribosomal small subunit pseudouridine synthase A (EC 5.4.99.-) 0.55 H281DRAFT_01850 D-lactate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS15560 pseudouridine synthase 0.52 BPHYT_RS03835 D-lactate dehydrogenase low > 109
Fusobacterium nucleatum SB010 0.28 HUW76_04445 rRNA pseudouridine synthase 0.26 HUW76_07605 lactate dehydrogenase low > 35
Shewanella sp. ANA-3 0.26 Shewana3_0760 ribosomal small subunit pseudouridine synthase A (RefSeq) 0.47 Shewana3_3319 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 73
Escherichia coli ECRC62 0.26 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 BNILDI_17985 ldhA D-lactate dehydrogenase low > 75
Escherichia coli ECRC101 0.26 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 MCAODC_16140 ldhA D-lactate dehydrogenase low > 87
Escherichia coli ECRC99 0.26 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 KEDOAH_26640 ldhA D-lactate dehydrogenase — —
Escherichia fergusonii Becca 0.26 EFB2_01673 Ribosomal small subunit pseudouridine synthase A 0.47 EFB2_02576 D-lactate dehydrogenase low > 86
Escherichia coli ECOR27 0.26 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 NOLOHH_19530 ldhA D-lactate dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A 0.47 OHPLBJKB_02331 D-lactate dehydrogenase low > 73
Escherichia coli ECRC100 0.26 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 OKFHMN_01795 ldhA D-lactate dehydrogenase low > 80
Escherichia coli BL21 0.26 ECD_02113 16S rRNA pseudouridine(516) synthase 0.47 ECD_01352 fermentative D-lactate dehydrogenase, NAD-dependent low > 61
Escherichia coli ECRC102 0.26 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 NIAGMN_25930 ldhA D-lactate dehydrogenase — —
Escherichia coli Nissle 1917 0.26 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA 0.47 ECOLIN_RS08110 D-lactate dehydrogenase — —
Escherichia coli ECOR38 0.26 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 HEPCGN_26050 ldhA D-lactate dehydrogenase low > 87
Escherichia coli ECRC98 0.26 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA 0.47 JDDGAC_04285 ldhA D-lactate dehydrogenase low > 86
Escherichia coli BW25113 0.26 b2183 rsuA 16S rRNA pseudouridylate 516 synthase (NCBI) 0.47 b1380 ldhA D-lactate dehydrogenase (NCBI) low > 76
Dickeya dadantii 3937 0.26 DDA3937_RS09160 16S rRNA pseudouridine(516) synthase RsuA 0.47 DDA3937_RS12295 2-hydroxyacid dehydrogenase low > 74
Pantoea sp. MT58 0.26 IAI47_06585 16S rRNA pseudouridine(516) synthase RsuA 0.47 IAI47_09495 2-hydroxyacid dehydrogenase low > 76
Rahnella sp. WP5 0.26 EX31_RS19195 16S rRNA pseudouridine(516) synthase RsuA 0.47 EX31_RS06470 2-hydroxyacid dehydrogenase low > 89
Pectobacterium carotovorum WPP14 0.26 HER17_RS12950 16S rRNA pseudouridine(516) synthase RsuA 0.45 HER17_RS09630 2-hydroxyacid dehydrogenase low > 75
Shewanella amazonensis SB2B 0.25 Sama_2614 pseudouridine synthase, Rsu (RefSeq) 0.47 Sama_0612 D-lactate dehydrogenase (RefSeq) low > 62
Serratia liquefaciens MT49 0.25 IAI46_17345 16S rRNA pseudouridine(516) synthase RsuA 0.48 IAI46_13355 2-hydroxyacid dehydrogenase low > 86
Enterobacter sp. TBS_079 0.25 MPMX20_03149 Ribosomal small subunit pseudouridine synthase A 0.47 MPMX20_02132 D-lactate dehydrogenase low > 85
Klebsiella michiganensis M5al 0.24 BWI76_RS19810 16S rRNA pseudouridine(516) synthase 0.47 BWI76_RS12790 lactate dehydrogenase — —
Enterobacter asburiae PDN3 0.24 EX28DRAFT_0378 pseudouridine synthase 0.47 EX28DRAFT_1435 Lactate dehydrogenase and related dehydrogenases low > 76
Vibrio cholerae E7946 ATCC 55056 0.24 CSW01_08220 16S rRNA pseudouridine(516) synthase 0.47 CSW01_14945 2-hydroxyacid dehydrogenase low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.24 GFF3753 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.47 GFF2638 D-lactate dehydrogenase (EC 1.1.1.28) low > 78
Shewanella loihica PV-4 0.23 Shew_2975 pseudouridine synthase (RefSeq) 0.45 Shew_0787 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding (RefSeq) low > 60
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_3297 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.53 Pf1N1B4_3500 D-lactate dehydrogenase (EC 1.1.1.28) low > 87
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_17535 16S rRNA pseudouridine(516) synthase 0.53 AO353_02740 hydroxyacid dehydrogenase low > 101
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_04690 16S rRNA pseudouridine(516) synthase 0.54 AO356_19040 hydroxyacid dehydrogenase low > 104
Pseudomonas stutzeri RCH2 0.19 Psest_3049 pseudouridine synthase 0.53 Psest_4064 Lactate dehydrogenase and related dehydrogenases low > 67
Pseudomonas sp. RS175 0.19 PFR28_00665 Ribosomal small subunit pseudouridine synthase A 0.52 PFR28_03228 D-lactate dehydrogenase low > 88
Pseudomonas putida KT2440 0.19 PP_1409 ribosomal small subunit pseudouridine synthase A 0.55 PP_1649 D-lactate dehydrogenase low > 96
Pseudomonas fluorescens FW300-N2E2 0.19 Pf6N2E2_2785 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.54 Pf6N2E2_5719 D-lactate dehydrogenase (EC 1.1.1.28) low > 103
Pseudomonas sp. S08-1 0.18 OH686_05950 SSU rRNA pseudouridine(516) synthase 0.48 OH686_18940 D-lactate dehydrogenase low > 80
Pseudomonas fluorescens GW456-L13 0.17 PfGW456L13_4535 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) 0.53 PfGW456L13_2028 D-lactate dehydrogenase (EC 1.1.1.28) low > 87
Pseudomonas simiae WCS417 0.17 PS417_07010 pseudouridine synthase 0.52 PS417_16375 2-hydroxyacid dehydrogenase low > 88
Pseudomonas fluorescens SBW25 0.17 PFLU_RS07085 pseudouridine synthase 0.50 PFLU_RS18415 2-hydroxyacid dehydrogenase low > 109
Pseudomonas fluorescens SBW25-INTG 0.17 PFLU_RS07085 pseudouridine synthase 0.50 PFLU_RS18415 2-hydroxyacid dehydrogenase low > 109

Not shown: 23 genomes with orthologs for HSERO_RS08590 only; 15 genomes with orthologs for HSERO_RS12550 only