| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Herbaspirillum seropedicae SmR1 | 1.0 | HSERO_RS05425 | | decarboxylase | 1.0 | HSERO_RS08275 | | branched-chain amino acid transporter permease subunit LivH | 0.31 | 18 |
| Cupriavidus basilensis FW507-4G11 | 0.52 | RR42_RS21340 | | DNA-binding protein | 0.93 | RR42_RS14420 | | branched-chain amino acid transporter permease subunit LivH | low | > 128 |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS01775 | | PLP-dependent aminotransferase family protein | 0.77 | ABCV34_RS03620 | | branched-chain amino acid ABC transporter permease LivH | low | > 48 |
| Pectobacterium carotovorum WPP14 | 0.44 | HER17_RS09875 | | PLP-dependent aminotransferase family protein | 0.62 | HER17_RS00500 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 75 |
| Dickeya dianthicola ME23 | 0.44 | DZA65_RS12410 | | PLP-dependent aminotransferase family protein | 0.62 | DZA65_RS21735 | | high-affinity branched-chain amino acid ABC transporter permease LivH | 0.40 | 7 |
| Dickeya dianthicola 67-19 | 0.44 | HGI48_RS11865 | | PLP-dependent aminotransferase family protein | 0.62 | HGI48_RS20725 | | high-affinity branched-chain amino acid ABC transporter permease LivH | 0.51 | 33 |
| Dickeya dadantii 3937 | 0.43 | DDA3937_RS11835 | | PLP-dependent aminotransferase family protein | 0.61 | DDA3937_RS00665 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 74 |
| Serratia liquefaciens MT49 | 0.42 | IAI46_22170 | | PLP-dependent aminotransferase family protein | 0.63 | IAI46_00965 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 86 |
| Klebsiella michiganensis M5al | 0.41 | BWI76_RS26380 | | decarboxylase | 0.59 | BWI76_RS26345 | | branched-chain amino acid ABC transporter permease LivH | low | > 92 |
| Rahnella sp. WP5 | 0.41 | EX31_RS00090 | | PLP-dependent aminotransferase family protein | 0.61 | EX31_RS14800 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 89 |
| Pantoea sp. MT58 | 0.39 | IAI47_19480 | | PLP-dependent aminotransferase family protein | 0.59 | IAI47_01570 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 76 |
| Azospirillum sp. SherDot2 | 0.34 | MPMX19_03847 | | HTH-type transcriptional regulatory protein GabR | 0.60 | MPMX19_06002 | | High-affinity branched-chain amino acid transport system permease protein LivH | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.31 | PfGW456L13_3163 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | 0.58 | PfGW456L13_4608 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 87 |
| Magnetospirillum magneticum AMB-1 | 0.30 | AMB_RS06965 | | PLP-dependent aminotransferase family protein | 0.57 | AMB_RS09135 | | branched-chain amino acid ABC transporter permease | 0.57 | 48 |
| Variovorax sp. OAS795 | 0.30 | ABID97_RS21960 | | PLP-dependent aminotransferase family protein | 0.55 | ABID97_RS27580 | | branched-chain amino acid ABC transporter permease LivH | low | > 91 |
| Pseudomonas fluorescens FW300-N2E3 | 0.30 | AO353_20995 | | transcriptional regulator | 0.59 | AO353_17120 | | branched-chain amino acid transporter permease subunit LivH | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.30 | Pf1N1B4_5999 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | 0.57 | Pf1N1B4_3217 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 87 |
| Rhodopseudomonas palustris CGA009 | 0.30 | TX73_007155 | | PLP-dependent aminotransferase family protein | 0.50 | TX73_019710 | | branched-chain amino acid ABC transporter permease | low | > 86 |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_2501 | | Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs | 0.58 | EX28DRAFT_4289 | | Branched-chain amino acid ABC-type transport system, permease components | low | > 76 |
| Pseudomonas sp. S08-1 | 0.29 | OH686_13310 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase | 0.58 | OH686_04610 | | Branched-chain amino acid ABC transporter, permease protein LivH | low | > 80 |
| Enterobacter sp. TBS_079 | 0.29 | MPMX20_01059 | | HTH-type transcriptional regulatory protein GabR | 0.58 | MPMX20_04333 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 85 |
| Pseudomonas fluorescens SBW25 | 0.29 | PFLU_RS29850 | | PLP-dependent aminotransferase family protein | 0.59 | PFLU_RS06640 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.29 | PFLU_RS29850 | | PLP-dependent aminotransferase family protein | 0.59 | PFLU_RS06640 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 109 |
| Dinoroseobacter shibae DFL-12 | 0.29 | Dshi_0609 | | transcriptional regulator, GntR family with aminotransferase domain (RefSeq) | 0.21 | Dshi_1979 | | inner-membrane translocator (RefSeq) | low | > 64 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.28 | Psyr_5056 | | transcriptional regulator, GntR family | 0.57 | Psyr_3846 | | L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.28 | Psyr_5056 | | transcriptional regulator, GntR family | 0.57 | Psyr_3846 | | L-valine ABC transporter membrane protein / L-isoleucine ABC transporter membrane protein / L-leucine ABC transporter membrane protein | low | > 86 |
| Pseudomonas simiae WCS417 | 0.28 | PS417_12985 | | DNA-binding protein | 0.59 | PS417_06610 | | branched-chain amino acid transporter permease subunit LivH | — | — |
| Pseudomonas putida KT2440 | 0.28 | PP_5342 | | Transcriptional regulator, GntR family | 0.58 | PP_1140 | | branched chain amino acid transporter - permease subunit | low | > 96 |
| Rhodospirillum rubrum S1H | 0.28 | Rru_A1143 | | regulatory protein GntR (NCBI) | 0.56 | Rru_A1751 | | inner-membrane translocator (NCBI) | low | > 58 |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS22530 | | transcriptional regulator | 0.59 | AZOBR_RS08235 | | L-proline and D-alanine ABC transporter, permease component 1 (from data) | low | > 97 |
| Marinobacter adhaerens HP15 | 0.27 | HP15_2761 | | transcriptional regulator, GntR family with aminotransferase domain protein | 0.58 | HP15_3056 | | high-affinity branched-chain amino acid ABC transporter, permease protein | low | > 73 |
| Pseudomonas fluorescens FW300-N2C3 | 0.27 | AO356_12070 | | GntR family transcriptional regulator | 0.58 | AO356_05325 | | branched-chain amino acid transporter permease subunit LivH | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.27 | Pf6N2E2_4288 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | 0.58 | Pf6N2E2_2923 | | ABC transporter for L-leucine/L-phenylalanine/D-alanine, permease component 1 LivH (from data) | low | > 103 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.27 | GFF1580 | | Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1) | 0.58 | GFF549 | | High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) | low | > 78 |
| Pseudomonas sp. RS175 | 0.26 | PFR28_04508 | | HTH-type transcriptional regulatory protein GabR | 0.59 | PFR28_00539 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 88 |
| Escherichia coli ECRC102 | 0.26 | NIAGMN_18620 | aRO8 | DNA-binding transcriptional regulator | 0.58 | NIAGMN_14515 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | — | — |
| Escherichia coli ECRC99 | 0.26 | KEDOAH_07285 | aRO8 | DNA-binding transcriptional regulator | 0.58 | KEDOAH_11395 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | — | — |
| Escherichia coli ECRC98 | 0.26 | JDDGAC_24515 | aRO8 | DNA-binding transcriptional regulator | 0.58 | JDDGAC_20375 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 86 |
| Escherichia coli ECRC100 | 0.26 | OKFHMN_20855 | aRO8 | DNA-binding transcriptional regulator | 0.58 | OKFHMN_16745 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 80 |
| Escherichia coli ECRC101 | 0.26 | MCAODC_11375 | aRO8 | DNA-binding transcriptional regulator | 0.58 | MCAODC_07275 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 87 |
| Escherichia fergusonii Becca | 0.26 | EFB2_01257 | | HTH-type transcriptional regulatory protein GabR | 0.58 | EFB2_00365 | | High-affinity branched-chain amino acid transport system permease protein LivH | low | > 86 |
| Escherichia coli Nissle 1917 | 0.26 | ECOLIN_RS14900 | | PLP-dependent aminotransferase family protein | 0.58 | ECOLIN_RS19770 | | high-affinity branched-chain amino acid ABC transporter permease LivH | low | > 55 |
| Escherichia coli ECOR38 | 0.26 | HEPCGN_20050 | aRO8 | DNA-binding transcriptional regulator, MocR family, contains an aminotransferase domain | 0.58 | HEPCGN_15565 | livH | high-affinity branched-chain amino acid ABC transporter permease LivH | 0.60 | 5 |
| Desulfovibrio vulgaris Miyazaki F | 0.25 | DvMF_3005 | | transcriptional regulator, GntR family with aminotransferase domain (RefSeq) | 0.51 | DvMF_2608 | | inner-membrane translocator (RefSeq) | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.24 | DVU2086 | | transcriptional regulator, GntR family (TIGR) | 0.52 | DVU0548 | livH | high-affinity branched-chain amino acid ABC transporter, permease protein (TIGR) | low | > 55 |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS04930 | | PLP-dependent aminotransferase family protein | 0.47 | ABIE40_RS14715 | | branched-chain amino acid ABC transporter permease LivH | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.15 | SM_b21525 | | transcriptional regulator | 0.48 | SMc01951 | | high-affinity branched-chain amino acid ABC transporter permease | low | > 103 |
Not shown: 19 genomes with orthologs for HSERO_RS05425 only; 9 genomes with orthologs for HSERO_RS08275 only