Conservation of cofitness between HSERO_RS07545 and HSERO_RS07155 in Herbaspirillum seropedicae SmR1

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS07545 2-dehydro-3-deoxygluconokinase 1.0 HSERO_RS07155 peptidase C69 0.25 15
Burkholderia phytofirmans PsJN 0.61 BPHYT_RS11300 2-dehydro-3-deoxygluconokinase 0.77 BPHYT_RS03540 peptidase C69 — —
Paraburkholderia bryophila 376MFSha3.1 0.61 H281DRAFT_05211 2-dehydro-3-deoxygluconokinase 0.77 H281DRAFT_04688 microcin-processing peptidase 2. Unknown type peptidase. MEROPS family U62 low > 103
Serratia liquefaciens MT49 0.60 IAI46_00095 sugar kinase 0.58 IAI46_22685 metalloprotease TldD low > 86
Pantoea sp. MT58 0.60 IAI47_00120 sugar kinase 0.58 IAI47_02465 metalloprotease TldD low > 76
Paraburkholderia sabiae LMG 24235 0.60 QEN71_RS07255 sugar kinase 0.76 QEN71_RS26555 metalloprotease TldD low > 153
Enterobacter asburiae PDN3 0.58 EX28DRAFT_3815 Sugar kinases, ribokinase family 0.56 EX28DRAFT_3295 Predicted Zn-dependent proteases and their inactivated homologs low > 76
Klebsiella michiganensis M5al 0.57 BWI76_RS26950 2-dehydro-3-deoxygluconokinase 0.57 BWI76_RS25470 metalloprotease TldD low > 92
Enterobacter sp. TBS_079 0.57 MPMX20_00179 2-dehydro-3-deoxygluconokinase 0.57 MPMX20_04151 Metalloprotease TldD low > 85
Variovorax sp. OAS795 0.57 ABID97_RS20030 sugar kinase 0.72 ABID97_RS06335 metalloprotease TldD low > 91
Variovorax sp. SCN45 0.57 GFF2716 2-dehydro-3-deoxygluconokinase (EC 2.7.1.45) 0.73 GFF4449 TldD protein, part of TldE/TldD proteolytic complex low > 127
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS09020 sugar kinase 0.77 ABZR87_RS01105 metalloprotease TldD low > 80
Pseudomonas putida KT2440 0.54 PP_3378 putative 2-ketogluconokinase 0.59 PP_0940 putative protease involved in Microcin B17 maturation and in sensitivity to the DNA gyrase inhibitor LetD low > 96
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_629 2-ketogluconate kinase (EC 2.7.1.13) 0.57 Pf6N2E2_3280 TldD protein, part of TldE/TldD proteolytic complex low > 103
Pseudomonas fluorescens FW300-N2C3 0.53 AO356_24685 2-dehydro-3-deoxygluconokinase 0.57 AO356_07095 protease TldD low > 104
Pseudomonas simiae WCS417 0.53 PS417_12565 2-dehydro-3-deoxygluconokinase 0.57 PS417_04285 protease TldD low > 88
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS09470 2-dehydro-3-deoxygluconokinase 0.79 RR42_RS05875 protease TldD low > 128
Pseudomonas sp. RS175 0.53 PFR28_01598 2-dehydro-3-deoxygluconokinase 0.57 PFR28_00161 Metalloprotease TldD low > 88
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_4765 2-ketogluconate kinase (EC 2.7.1.13) 0.57 Pf1N1B4_1092 TldD protein, part of TldE/TldD proteolytic complex low > 87
Pseudomonas fluorescens SBW25 0.52 PFLU_RS13250 sugar kinase 0.57 PFLU_RS04340 metalloprotease TldD low > 109
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS13250 sugar kinase 0.57 PFLU_RS04340 metalloprotease TldD low > 109
Castellaniella sp019104865 MT123 0.52 ABCV34_RS08620 sugar kinase 0.69 ABCV34_RS02590 metalloprotease TldD low > 48
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_26875 2-dehydro-3-deoxygluconokinase 0.57 AO353_05215 protease TldD 0.30 21
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_2950 2-ketogluconate kinase (EC 2.7.1.13) 0.56 PfGW456L13_5026 TldD protein, part of TldE/TldD proteolytic complex low > 87
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.19 GFF1533 Fructokinase (EC 2.7.1.4) 0.56 GFF2140 TldD protein, part of TldE/TldD proteolytic complex low > 78
Escherichia coli BL21 0.18 ECD_01741 putative kinase 0.57 ECD_03104 putative peptidase — —
Escherichia coli Nissle 1917 0.18 ECOLIN_RS09885 sugar kinase 0.57 ECOLIN_RS18595 metalloprotease TldD — —
Escherichia coli BW25113 0.18 b1772 b1772 putative kinase (VIMSS) 0.57 b3244 tldD predicted peptidase (NCBI) low > 76
Escherichia coli ECOR27 0.18 NOLOHH_17295 ydjH Uncharacterized sugar kinase YdjH 0.57 NOLOHH_09555 tldD metalloprotease TldD low > 75
Escherichia fergusonii Becca 0.18 EFB2_02222 putative sugar kinase YdjH 0.57 EFB2_00586 Metalloprotease TldD low > 86
Escherichia coli ECRC102 0.18 NIAGMN_20245 cscK aminoimidazole riboside kinase 0.57 NIAGMN_15515 tldD metalloprotease TldD — —
Escherichia coli ECRC101 0.18 MCAODC_13000 cscK aminoimidazole riboside kinase 0.57 MCAODC_08275 tldD metalloprotease TldD low > 87
Escherichia coli ECRC62 0.18 BNILDI_16080 rbsK sugar kinase 0.57 BNILDI_01980 tldD metalloprotease TldD low > 75
Escherichia coli ECRC100 0.18 OKFHMN_22470 cscK aminoimidazole riboside kinase 0.57 OKFHMN_17755 tldD metalloprotease TldD low > 80
Escherichia coli ECRC98 0.18 JDDGAC_26430 cscK aminoimidazole riboside kinase 0.57 JDDGAC_21380 tldD metalloprotease TldD low > 86
Pectobacterium carotovorum WPP14 0.18 HER17_RS19640 aminoimidazole riboside kinase 0.57 HER17_RS20140 metalloprotease TldD low > 75
Escherichia coli ECOR38 0.18 HEPCGN_05155 rbsK sugar kinase 0.57 HEPCGN_16620 tldD metalloprotease TldD low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.18 OHPLBJKB_01960 putative sugar kinase YdjH 0.57 OHPLBJKB_00460 Metalloprotease TldD low > 73
Dickeya dianthicola 67-19 0.17 HGI48_RS01780 aminoimidazole riboside kinase 0.57 HGI48_RS01380 metalloprotease TldD low > 71
Dickeya dianthicola ME23 0.17 DZA65_RS01855 aminoimidazole riboside kinase 0.56 DZA65_RS01440 metalloprotease TldD low > 75
Dickeya dadantii 3937 0.17 DDA3937_RS01855 aminoimidazole riboside kinase 0.57 DDA3937_RS01460 metalloprotease TldD low > 74
Vibrio cholerae E7946 ATCC 55056 0.17 CSW01_17490 aminoimidazole riboside kinase 0.54 CSW01_02220 metalloprotease TldD low > 62
Escherichia coli ECRC99 0.17 KEDOAH_01345 rbsK sugar kinase 0.57 KEDOAH_10395 tldD metalloprotease TldD — —
Alteromonas macleodii MIT1002 0.15 MIT1002_03302 2-dehydro-3-deoxygluconokinase 0.59 MIT1002_00227 protease TldD low > 70
Rahnella sp. WP5 0.15 EX31_RS00440 aminoimidazole riboside kinase 0.56 EX31_RS12265 metalloprotease TldD low > 89
Rhodanobacter sp. FW510-T8 0.13 OKGIIK_01685 rbsK carbohydrate kinase 0.62 OKGIIK_10280 tldD metalloprotease TldD low > 52
Bacteroides stercoris CC31F 0.13 HMPREF1181_RS00960 adenosine kinase 0.32 HMPREF1181_RS03165 TldD/PmbA family protein low > 56
Xanthomonas campestris pv. campestris strain 8004 0.12 Xcc-8004.3385.1 Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4) 0.62 Xcc-8004.1883.1 TldD protein, part of TldE/TldD proteolytic complex low > 74
Rhodanobacter denitrificans MT42 0.12 LRK55_RS04840 carbohydrate kinase 0.60 LRK55_RS03145 metalloprotease TldD low > 63
Rhodanobacter denitrificans FW104-10B01 0.12 LRK54_RS05060 carbohydrate kinase 0.60 LRK54_RS03395 metalloprotease TldD low > 59
Sphingomonas koreensis DSMZ 15582 0.12 Ga0059261_2965 Sugar kinases, ribokinase family 0.53 Ga0059261_2252 Predicted Zn-dependent proteases and their inactivated homologs low > 68
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS07670 sugar kinase 0.47 A4249_RS10860 metalloprotease TldD low > 48
Parabacteroides merdae CL09T00C40 0.09 HMPREF1078_RS05605 sugar kinase 0.34 HMPREF1078_RS03620 TldD/PmbA family protein low > 61

Not shown: 2 genomes with orthologs for HSERO_RS07545 only; 35 genomes with orthologs for HSERO_RS07155 only