Conservation of cofitness between HSERO_RS23825 and HSERO_RS05840 in Herbaspirillum seropedicae SmR1

48 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS23825 hypothetical protein 1.0 HSERO_RS05840 FAD-dependent oxidoreductase 0.46 13
Burkholderia phytofirmans PsJN 0.29 BPHYT_RS19575 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.61 BPHYT_RS13575 FAD-dependent oxidoreductase low > 109
Paraburkholderia graminis OAS925 0.28 ABIE53_000291 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.23 ABIE53_005139 gamma-glutamylputrescine oxidase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.27 H281DRAFT_02360 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein 0.66 H281DRAFT_02574 Glycine/D-amino acid oxidase (deaminating) low > 103
Ralstonia sp. UNC404CL21Col 0.27 ABZR87_RS12805 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.58 ABZR87_RS04700 FAD-binding oxidoreductase low > 80
Paraburkholderia sabiae LMG 24235 0.26 QEN71_RS29485 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.66 QEN71_RS35580 FAD-binding oxidoreductase low > 153
Ralstonia solanacearum GMI1000 0.25 RS_RS08635 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.58 RS_RS17075 FAD-binding oxidoreductase low > 80
Ralstonia solanacearum PSI07 0.25 RPSI07_RS16115 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.58 RPSI07_RS08030 FAD-binding oxidoreductase low > 81
Ralstonia solanacearum UW163 0.24 UW163_RS14670 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.58 UW163_RS04345 FAD-binding oxidoreductase — —
Ralstonia solanacearum IBSBF1503 0.24 RALBFv3_RS01360 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.58 RALBFv3_RS09245 FAD-binding oxidoreductase low > 76
Cupriavidus basilensis FW507-4G11 0.21 RR42_RS09010 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.56 RR42_RS34300 FAD-dependent oxidoreductase low > 128
Escherichia coli ECOR27 0.20 NOLOHH_14275 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 NOLOHH_20110 puuB gamma-glutamylputrescine oxidase low > 75
Escherichia coli ECOR38 0.20 HEPCGN_21845 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 HEPCGN_25775 puuB gamma-glutamylputrescine oxidase low > 87
Escherichia coli BW25113 0.20 b2324 b2324 putative peptidase (VIMSS) 0.22 b1301 puuB gamma-Glu-putrescine oxidase, FAD/NAD(P)-binding (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.20 OHPLBJKB_01381 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.22 OHPLBJKB_02381 Gamma-glutamylputrescine oxidoreductase low > 73
Pseudomonas fluorescens FW300-N1B4 0.20 Pf1N1B4_373 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.30 Pf1N1B4_1383 L-pipecolate oxidase (1.5.3.7) low > 87
Escherichia coli ECRC62 0.19 BNILDI_13195 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 BNILDI_18260 puuB gamma-glutamylputrescine oxidase low > 75
Escherichia coli ECRC100 0.19 OKFHMN_22640 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.21 OKFHMN_02425 puuB gamma-glutamylputrescine oxidase low > 80
Escherichia coli ECRC101 0.19 MCAODC_13680 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 MCAODC_15845 puuB gamma-glutamylputrescine oxidase low > 87
Escherichia coli ECRC99 0.19 KEDOAH_05555 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 KEDOAH_26350 puuB gamma-glutamylputrescine oxidase — —
Pseudomonas fluorescens FW300-N2E3 0.19 AO353_02165 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.30 AO353_13335 FAD-dependent oxidoreductase low > 101
Escherichia coli ECRC98 0.19 JDDGAC_26600 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 JDDGAC_04970 puuB gamma-glutamylputrescine oxidase low > 86
Escherichia coli ECRC102 0.19 NIAGMN_20415 mnmC bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.21 NIAGMN_26595 puuB gamma-glutamylputrescine oxidase — —
Escherichia coli BL21 0.19 ECD_02249 fused 5-methylaminomethyl-2-thiouridine-forming enzyme methyltransferase and FAD-dependent demodification enzyme 0.22 ECD_01278 gamma-glutamylputrescine oxidoreductase low > 61
Pseudomonas stutzeri RCH2 0.19 Psest_1634 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.24 Psest_3795 Glycine/D-amino acid oxidases (deaminating) low > 67
Klebsiella michiganensis M5al 0.19 BWI76_RS20410 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.22 BWI76_RS10690 gamma-glutamylputrescine oxidoreductase low > 92
Pseudomonas fluorescens GW456-L13 0.19 PfGW456L13_2155 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.30 PfGW456L13_126 L-pipecolate oxidase (1.5.3.7) low > 87
Pseudomonas fluorescens FW300-N2C3 0.19 AO356_03570 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.60 AO356_29640 FAD-dependent oxidoreductase low > 104
Pseudomonas sp. S08-1 0.19 OH686_20990 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.23 OH686_22830 Gamma-glutamyl-putrescine oxidase low > 80
Enterobacter asburiae PDN3 0.18 EX28DRAFT_0280 tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain 0.22 EX28DRAFT_1502 Glycine/D-amino acid oxidases (deaminating) low > 76
Pseudomonas sp. RS175 0.18 PFR28_00884 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.61 PFR28_01468 Gamma-glutamylputrescine oxidoreductase low > 88
Pseudomonas fluorescens FW300-N2E2 0.18 Pf6N2E2_2541 5-methylaminomethyl-2-thiouridine-forming enzyme mnmC 0.29 Pf6N2E2_3581 L-pipecolate oxidase (1.5.3.7) low > 103
Serratia liquefaciens MT49 0.18 IAI46_18000 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.23 IAI46_17170 FAD-binding oxidoreductase low > 86
Pectobacterium carotovorum WPP14 0.18 HER17_RS06960 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.10 HER17_RS21315 FAD-binding oxidoreductase low > 75
Pseudomonas syringae pv. syringae B728a ΔmexB 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.29 Psyr_3513 FAD dependent oxidoreductase low > 86
Pseudomonas syringae pv. syringae B728a 0.17 Psyr_3742 FAD dependent oxidoreductase:Protein of unknown function DUF752 0.29 Psyr_3513 FAD dependent oxidoreductase low > 86
Pseudomonas simiae WCS417 0.17 PS417_19225 FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.57 PS417_15495 FAD-dependent oxidoreductase low > 88
Pseudomonas putida KT2440 0.17 PP_1751 methyltransferase/FAD-dependent oxidoreductase 0.27 PP_5257 L-pipecolate oxidase low > 96
Marinobacter adhaerens HP15 0.17 HP15_1540 protein YfcK 0.21 HP15_944 FAD dependent oxidoreductase 0.59 5
Pantoea sp. MT58 0.16 IAI47_06175 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.23 IAI47_07110 FAD-binding oxidoreductase low > 76
Pseudomonas fluorescens SBW25 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.57 PFLU_RS17480 FAD-binding oxidoreductase low > 109
Pseudomonas fluorescens SBW25-INTG 0.16 PFLU_RS21190 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.57 PFLU_RS17480 FAD-binding oxidoreductase low > 109
Rahnella sp. WP5 0.15 EX31_RS19660 bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC 0.23 EX31_RS17910 FAD-binding oxidoreductase low > 89
Shewanella sp. ANA-3 0.15 Shewana3_1474 FAD dependent oxidoreductase (RefSeq) 0.23 Shewana3_3093 FAD dependent oxidoreductase (RefSeq) low > 73
Variovorax sp. SCN45 0.14 GFF1245 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) / FAD-dependent cmnm(5)s(2)U34 oxidoreductase 0.59 GFF1857 FIG00553873: hypothetical protein low > 127
Shewanella oneidensis MR-1 0.13 SO3073 conserved hypothetical protein (NCBI ptt file) 0.23 SO1274 conserved hypothetical protein (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.12 MIT1002_02542 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.20 MIT1002_03149 Gamma-glutamylputrescine oxidoreductase low > 70
Shewanella loihica PV-4 0.12 Shew_2411 FAD dependent oxidoreductase (RefSeq) 0.22 Shew_0969 FAD dependent oxidoreductase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.09 MPMX26_02642 tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC 0.19 MPMX26_00853 Gamma-glutamylputrescine oxidoreductase 0.56 19

Not shown: 16 genomes with orthologs for HSERO_RS23825 only; 13 genomes with orthologs for HSERO_RS05840 only