Conservation of cofitness between HGI48_RS06620 and HGI48_RS19740 in Dickeya dianthicola 67-19

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS06620 galactose-1-epimerase 1.0 HGI48_RS19740 phosphoenolpyruvate carboxykinase (ATP) 0.74 3
Dickeya dianthicola ME23 0.98 DZA65_RS06975 galactose-1-epimerase 0.99 DZA65_RS20830 phosphoenolpyruvate carboxykinase (ATP) low > 75
Dickeya dadantii 3937 0.91 DDA3937_RS06600 galactose-1-epimerase 0.99 DDA3937_RS19610 phosphoenolpyruvate carboxykinase (ATP) low > 74
Pectobacterium carotovorum WPP14 0.67 HER17_RS14770 galactose-1-epimerase 0.93 HER17_RS01710 phosphoenolpyruvate carboxykinase (ATP) low > 75
Serratia liquefaciens MT49 0.63 IAI46_06420 galactose-1-epimerase 0.90 IAI46_23770 phosphoenolpyruvate carboxykinase (ATP) low > 86
Rahnella sp. WP5 0.58 EX31_RS23565 galactose-1-epimerase 0.85 EX31_RS04780 phosphoenolpyruvate carboxykinase (ATP) low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF649 Aldose 1-epimerase (EC 5.1.3.3) 0.89 GFF615 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_02957 Aldose 1-epimerase 0.88 OHPLBJKB_00300 Phosphoenolpyruvate carboxykinase (ATP) low > 73
Escherichia coli ECRC62 0.57 BNILDI_21155 galM galactose-1-epimerase 0.88 BNILDI_02685 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli BW25113 0.57 b0756 galM galactose-1-epimerase (mutarotase) (NCBI) 0.88 b3403 pck phosphoenolpyruvate carboxykinase (NCBI) low > 76
Escherichia coli ECOR38 0.57 HEPCGN_01545 galM galactose-1-epimerase 0.88 HEPCGN_15865 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECOR27 0.57 NOLOHH_23160 galM galactose-1-epimerase 0.88 NOLOHH_08835 pckA phosphoenolpyruvate carboxykinase (ATP) low > 75
Escherichia coli Nissle 1917 0.57 ECOLIN_RS04025 galactose-1-epimerase 0.88 ECOLIN_RS19435 phosphoenolpyruvate carboxykinase (ATP) low > 55
Escherichia fergusonii Becca 0.57 EFB2_03350 Aldose 1-epimerase 0.88 EFB2_00425 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Erwinia tracheiphila SCR3 0.57 LU632_RS15915 galM galactose-1-epimerase 0.82 LU632_RS22930 pckA phosphoenolpyruvate carboxykinase (ATP) low > 74
Pantoea sp. MT58 0.57 IAI47_13595 galactose-1-epimerase 0.81 IAI47_01830 phosphoenolpyruvate carboxykinase (ATP) low > 76
Escherichia coli ECRC101 0.57 MCAODC_25950 galM galactose-1-epimerase 0.88 MCAODC_07575 pckA phosphoenolpyruvate carboxykinase (ATP) low > 87
Escherichia coli ECRC100 0.57 OKFHMN_06730 galM galactose-1-epimerase 0.88 OKFHMN_17045 pckA phosphoenolpyruvate carboxykinase (ATP) low > 80
Escherichia coli ECRC98 0.57 JDDGAC_10385 galM galactose-1-epimerase 0.88 JDDGAC_20675 pckA phosphoenolpyruvate carboxykinase (ATP) low > 86
Escherichia coli ECRC102 0.57 NIAGMN_04780 galM galactose-1-epimerase 0.88 NIAGMN_14815 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Escherichia coli ECRC99 0.57 KEDOAH_21235 galM galactose-1-epimerase 0.88 KEDOAH_11095 pckA phosphoenolpyruvate carboxykinase (ATP) — —
Klebsiella michiganensis M5al 0.56 BWI76_RS08610 galactose-1-epimerase 0.87 BWI76_RS26155 phosphoenolpyruvate carboxykinase (ATP) low > 92
Enterobacter asburiae PDN3 0.56 EX28DRAFT_2239 galactose mutarotase 0.88 EX28DRAFT_4140 phosphoenolpyruvate carboxykinase (ATP) low > 76
Enterobacter sp. TBS_079 0.56 MPMX20_01383 Aldose 1-epimerase 0.88 MPMX20_04290 Phosphoenolpyruvate carboxykinase (ATP) low > 85
Vibrio cholerae E7946 ATCC 55056 0.45 CSW01_07995 galactose-1-epimerase 0.81 CSW01_13810 phosphoenolpyruvate carboxykinase (ATP) low > 62
Pedobacter sp. GW460-11-11-14-LB5 0.29 CA265_RS08330 galactose-1-epimerase 0.42 CA265_RS23490 phosphoenolpyruvate carboxykinase (ATP) low > 88
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS15165 galactose mutarotase 0.70 HMPREF1058_RS10065 phosphoenolpyruvate carboxykinase (ATP) — —
Shewanella oneidensis MR-1 0.28 SO0693 galM aldose 1-epimerase (NCBI ptt file) 0.35 SO0162 pckA phosphoenolpyruvate carboxykinase (ATP) (NCBI ptt file) low > 76
Phocaeicola dorei CL03T12C01 0.28 ABI39_RS10920 galactose mutarotase 0.70 ABI39_RS06685 phosphoenolpyruvate carboxykinase (ATP) — —
Bacteroides ovatus ATCC 8483 0.28 BACOVA_03348 aldose 1-epimerase 0.70 BACOVA_02011 phosphoenolpyruvate carboxykinase (ATP) — —
Shewanella sp. ANA-3 0.28 Shewana3_3579 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.36 Shewana3_0147 phosphoenolpyruvate carboxykinase (RefSeq) low > 73
Bacteroides thetaiotaomicron VPI-5482 0.28 BT3529 aldose 1-epimerase precursor (NCBI ptt file) 0.71 BT2790 phosphoenolpyruvate carboxykinase [ATP] (NCBI ptt file) — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.27 Echvi_0697 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.43 Echvi_2957 phosphoenolpyruvate carboxykinase (ATP) — —
Parabacteroides merdae CL09T00C40 0.27 HMPREF1078_RS08705 aldose epimerase family protein 0.70 HMPREF1078_RS07235 phosphoenolpyruvate carboxykinase (ATP) — —
Bacteroides stercoris CC31F 0.27 HMPREF1181_RS04435 galactose mutarotase 0.70 HMPREF1181_RS01170 phosphoenolpyruvate carboxykinase (ATP) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_09120 galactose-1-epimerase 0.45 CA264_05270 phosphoenolpyruvate carboxykinase (ATP) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_2369 aldose 1-epimerase 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_2369 aldose 1-epimerase 0.33 Psyr_0168 Phosphoenolpyruvate carboxykinase (ATP) low > 86
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_84 Aldose 1-epimerase (EC 5.1.3.3) 0.34 Pf1N1B4_1779 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) — —
Pseudomonas sp. RS175 0.25 PFR28_01305 Aldose 1-epimerase 0.34 PFR28_04874 Phosphoenolpyruvate carboxykinase (ATP) low > 88
Shewanella amazonensis SB2B 0.25 Sama_0535 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.37 Sama_0165 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) (from data) low > 62
Shewanella loihica PV-4 0.24 Shew_3272 Aldose 1-epimerase (EC 5.1.3.3) (from data) 0.36 Shew_3623 phosphoenolpyruvate carboxykinase (RefSeq) low > 60
Pseudomonas fluorescens SBW25-INTG 0.24 PFLU_RS11665 galactose mutarotase 0.33 PFLU_RS01320 phosphoenolpyruvate carboxykinase 0.12 75
Pseudomonas fluorescens SBW25 0.24 PFLU_RS11665 galactose mutarotase 0.33 PFLU_RS01320 phosphoenolpyruvate carboxykinase low > 109
Pseudomonas fluorescens FW300-N2C3 0.24 AO356_01315 aldose epimerase 0.32 AO356_10140 phosphoenolpyruvate carboxykinase [ATP] low > 104
Pseudomonas simiae WCS417 0.24 PS417_11040 aldose epimerase 0.34 PS417_01210 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2E2 0.24 Pf6N2E2_2135 Aldose 1-epimerase (EC 5.1.3.3) 0.32 Pf6N2E2_3899 Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49) low > 103
Sinorhizobium meliloti 1021 0.23 SMc03798 aldose 1-epimerase 0.41 SMc02562 phosphoenolpyruvate carboxykinase low > 103
Alteromonas macleodii MIT1002 0.22 MIT1002_00187 Aldose 1-epimerase precursor 0.36 MIT1002_03972 Phosphoenolpyruvate carboxykinase [ATP] low > 70
Agrobacterium fabrum C58 0.22 Atu2719 aldose epimerase 0.43 Atu0035 phosphoenolpyruvate carboxykinase low > 89
Rhizobium sp. OAE497 0.21 ABIE40_RS18585 aldose epimerase family protein 0.40 ABIE40_RS19415 phosphoenolpyruvate carboxykinase low > 107
Fusobacterium nucleatum SB010 0.21 HUW76_01285 galactose mutarotase 0.39 HUW76_06485 phosphoenolpyruvate carboxykinase (ATP) low > 35
Phaeobacter inhibens DSM 17395 0.18 PGA1_262p00390 aldose 1-epimerase 0.39 PGA1_c01140 phosphoenolpyruvate carboxykinase low > 62
Dinoroseobacter shibae DFL-12 0.16 Dshi_2683 Aldose 1-epimerase (RefSeq) 0.40 Dshi_0213 Phosphoenolpyruvate carboxykinase (ATP) (RefSeq) low > 64

Not shown: 18 genomes with orthologs for HGI48_RS06620 only; 10 genomes with orthologs for HGI48_RS19740 only