Conservation of cofitness between HGI48_RS03400 and HGI48_RS06470 in Dickeya dianthicola 67-19

53 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dickeya dianthicola 67-19 1.0 HGI48_RS03400 aminomethyl-transferring glycine dehydrogenase 1.0 HGI48_RS06470 5-oxoprolinase subunit PxpA 0.68 1
Dickeya dianthicola ME23 0.98 DZA65_RS03445 aminomethyl-transferring glycine dehydrogenase 0.98 DZA65_RS06815 5-oxoprolinase subunit PxpA low > 75
Dickeya dadantii 3937 0.93 DDA3937_RS03255 aminomethyl-transferring glycine dehydrogenase 0.93 DDA3937_RS06425 5-oxoprolinase subunit PxpA low > 74
Pectobacterium carotovorum WPP14 0.85 HER17_RS17995 aminomethyl-transferring glycine dehydrogenase 0.76 HER17_RS14975 5-oxoprolinase subunit PxpA low > 75
Serratia liquefaciens MT49 0.82 IAI46_20850 aminomethyl-transferring glycine dehydrogenase 0.75 IAI46_06225 5-oxoprolinase subunit PxpA low > 86
Rahnella sp. WP5 0.82 EX31_RS21520 aminomethyl-transferring glycine dehydrogenase 0.73 EX31_RS23395 5-oxoprolinase subunit PxpA low > 89
Pantoea sp. MT58 0.82 IAI47_03775 aminomethyl-transferring glycine dehydrogenase 0.65 IAI47_13795 5-oxoprolinase subunit PxpA low > 76
Escherichia fergusonii Becca 0.81 EFB2_00999 Glycine dehydrogenase (decarboxylating) 0.69 EFB2_03390 5-oxoprolinase subunit A low > 86
Escherichia coli Nissle 1917 0.81 ECOLIN_RS16165 aminomethyl-transferring glycine dehydrogenase 0.69 ECOLIN_RS03815 5-oxoprolinase subunit PxpA low > 55
Escherichia coli ECRC100 0.81 OKFHMN_19530 gcvP aminomethyl-transferring glycine dehydrogenase 0.68 OKFHMN_06995 pxpA 5-oxoprolinase subunit PxpA low > 80
Escherichia coli ECOR38 0.81 HEPCGN_18820 gcvP aminomethyl-transferring glycine dehydrogenase 0.69 HEPCGN_01215 pxpA 5-oxoprolinase subunit PxpA low > 87
Escherichia coli ECRC102 0.81 NIAGMN_17295 gcvP aminomethyl-transferring glycine dehydrogenase 0.68 NIAGMN_05050 pxpA 5-oxoprolinase subunit PxpA — —
Escherichia coli ECRC98 0.81 JDDGAC_23170 gcvP aminomethyl-transferring glycine dehydrogenase 0.68 JDDGAC_10650 pxpA 5-oxoprolinase subunit PxpA low > 86
Escherichia coli ECRC101 0.81 MCAODC_10050 gcvP aminomethyl-transferring glycine dehydrogenase 0.68 MCAODC_26215 pxpA 5-oxoprolinase subunit PxpA low > 87
Escherichia coli ECRC99 0.81 KEDOAH_08610 gcvP aminomethyl-transferring glycine dehydrogenase 0.68 KEDOAH_20970 pxpA 5-oxoprolinase subunit PxpA — —
Escherichia coli ECRC62 0.81 BNILDI_09980 gcvP aminomethyl-transferring glycine dehydrogenase 0.69 BNILDI_21375 pxpA 5-oxoprolinase subunit PxpA low > 75
Escherichia coli BL21 0.81 ECD_02735 glycine decarboxylase, PLP-dependent, subunit P of glycine cleavage complex 0.69 ECD_00673 UPF0271 family protein low > 61
Escherichia coli BW25113 0.81 b2903 gcvP glycine dehydrogenase (NCBI) 0.69 b0713 ybgL hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.81 OHPLBJKB_00812 Glycine dehydrogenase (decarboxylating) 0.69 OHPLBJKB_03004 hypothetical protein low > 73
Escherichia coli ECOR27 0.81 NOLOHH_11445 gcvP aminomethyl-transferring glycine dehydrogenase 0.69 NOLOHH_23380 pxpA 5-oxoprolinase subunit PxpA low > 75
Klebsiella michiganensis M5al 0.80 BWI76_RS23870 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.71 BWI76_RS08360 LamB/YcsF family protein low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.80 GFF3003 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.66 GFF4618 Lactam utilization protein LamB low > 78
Enterobacter sp. TBS_079 0.79 MPMX20_03762 Glycine dehydrogenase (decarboxylating) 0.66 MPMX20_01347 5-oxoprolinase subunit A low > 85
Enterobacter asburiae PDN3 0.79 EX28DRAFT_2955 glycine dehydrogenase (decarboxylating) 0.68 EX28DRAFT_2274 Uncharacterized proteins, homologs of lactam utilization protein B low > 76
Shewanella amazonensis SB2B 0.69 Sama_2719 glycine dehydrogenase (RefSeq) 0.43 Sama_0021 hypothetical protein (RefSeq) low > 62
Shewanella loihica PV-4 0.67 Shew_3062 glycine dehydrogenase (RefSeq) 0.46 Shew_0006 LamB/YcsF family protein (RefSeq) low > 60
Pseudomonas sp. S08-1 0.63 OH686_11165 glycine dehydrogenase 0.37 OH686_08750 Lactam utilization protein LamB low > 80
Pseudomonas fluorescens FW300-N1B4 0.62 Pf1N1B4_2236 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.35 Pf1N1B4_3366 Lactam utilization protein LamB low > 87
Pseudomonas stutzeri RCH2 0.62 Psest_0183 glycine dehydrogenase (decarboxylating) 0.34 Psest_1542 Uncharacterized proteins, homologs of lactam utilization protein B low > 67
Pseudomonas fluorescens FW300-N2E3 0.62 AO353_08720 glycine dehydrogenase 0.35 AO353_17995 hypothetical protein low > 101
Kangiella aquimarina DSM 16071 0.60 B158DRAFT_0545 glycine dehydrogenase (decarboxylating) 0.35 B158DRAFT_1994 Uncharacterized proteins, homologs of lactam utilization protein B — —
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_15330 glycine dehydrogenase (decarboxylating) 0.36 CSW01_18055 hypothetical protein low > 62
Ralstonia solanacearum IBSBF1503 0.57 RALBFv3_RS08660 glycine dehydrogenase (aminomethyl-transferring) 0.62 RALBFv3_RS03425 LamB/YcsF family protein — —
Ralstonia solanacearum UW163 0.57 UW163_RS04950 glycine dehydrogenase (aminomethyl-transferring) 0.62 UW163_RS10245 LamB/YcsF family protein — —
Paraburkholderia bryophila 376MFSha3.1 0.57 H281DRAFT_02409 glycine dehydrogenase 0.60 H281DRAFT_05811 UPF0271 protein low > 103
Ralstonia solanacearum PSI07 0.57 RPSI07_RS08575 glycine dehydrogenase (aminomethyl-transferring) 0.62 RPSI07_RS13790 LamB/YcsF family protein low > 81
Pseudomonas sp. RS175 0.57 PFR28_03383 Glycine dehydrogenase (decarboxylating) 0.34 PFR28_00728 5-oxoprolinase subunit A 3 low > 88
Burkholderia phytofirmans PsJN 0.56 BPHYT_RS19330 glycine cleavage system P protein (EC 1.4.4.2) (from data) 0.59 BPHYT_RS18635 LamB/YcsF family protein low > 109
Paraburkholderia sabiae LMG 24235 0.56 QEN71_RS29215 aminomethyl-transferring glycine dehydrogenase 0.59 QEN71_RS28660 5-oxoprolinase subunit PxpA low > 153
Lysobacter sp. OAE881 0.56 ABIE51_RS14345 aminomethyl-transferring glycine dehydrogenase 0.39 ABIE51_RS08130 5-oxoprolinase subunit PxpA low > 62
Pseudomonas fluorescens FW300-N2E2 0.56 Pf6N2E2_5558 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.34 Pf6N2E2_2708 Lactam utilization protein LamB low > 103
Ralstonia sp. UNC404CL21Col 0.56 ABZR87_RS03935 aminomethyl-transferring glycine dehydrogenase 0.63 ABZR87_RS15325 5-oxoprolinase subunit PxpA 0.70 7
Pseudomonas simiae WCS417 0.56 PS417_22360 Glycine dehydrogenase (aminomethyl-transferring) (EC 1.4.4.2) (from data) 0.34 PS417_07470 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.56 AO356_18170 glycine dehydrogenase 0.34 AO356_04335 hypothetical protein low > 104
Paraburkholderia graminis OAS925 0.56 ABIE53_000238 glycine dehydrogenase 0.60 ABIE53_000049 UPF0271 protein low > 113
Ralstonia solanacearum GMI1000 0.56 RS_RS16510 glycine dehydrogenase 0.62 RS_RS10885 LamB/YcsF family protein low > 80
Cupriavidus basilensis FW507-4G11 0.56 RR42_RS20070 glycine dehydrogenase 0.62 RR42_RS00650 hypothetical protein low > 128
Rhodanobacter sp. FW510-T8 0.55 OKGIIK_06740 gcvP2 Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain 0.45 OKGIIK_04730 5-oxoprolinase subunit A low > 52
Variovorax sp. SCN45 0.54 GFF6478 Glycine dehydrogenase [decarboxylating] (glycine cleavage system P protein) (EC 1.4.4.2) 0.64 GFF2324 Lactam utilization protein LamB low > 127
Variovorax sp. OAS795 0.54 ABID97_RS19655 aminomethyl-transferring glycine dehydrogenase 0.64 ABID97_RS23840 5-oxoprolinase subunit PxpA low > 91
Echinicola vietnamensis KMM 6221, DSM 17526 0.54 Echvi_0744 glycine dehydrogenase (decarboxylating) 0.38 Echvi_3010 Uncharacterized proteins, homologs of lactam utilization protein B low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.53 ABZR88_RS01785 aminomethyl-transferring glycine dehydrogenase 0.46 ABZR88_RS12605 5-oxoprolinase subunit PxpA low > 71
Pontibacter actiniarum KMM 6156, DSM 19842 0.52 CA264_18410 glycine dehydrogenase (aminomethyl-transferring) 0.49 CA264_08790 LamB/YcsF family protein low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.52 CA265_RS25185 glycine dehydrogenase (aminomethyl-transferring) 0.49 CA265_RS10100 lactam utilization protein LamB low > 88

Not shown: 32 genomes with orthologs for HGI48_RS03400 only; 3 genomes with orthologs for HGI48_RS06470 only