Conservation of cofitness between HER17_RS02775 and HER17_RS19045 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS02775 protein CreA 1.0 HER17_RS19045 TatD family hydrolase 0.63 8
Klebsiella michiganensis M5al 0.82 BWI76_RS04210 hypothetical protein 0.60 BWI76_RS04120 metal-dependent hydrolase low > 92
Rahnella sp. WP5 0.80 EX31_RS03960 protein CreA 0.56 EX31_RS04070 deoxyribonuclease YjjV low > 89
Dickeya dadantii 3937 0.79 DDA3937_RS18430 protein CreA 0.67 DDA3937_RS02460 TatD family hydrolase low > 74
Serratia liquefaciens MT49 0.78 IAI46_03010 protein CreA 0.65 IAI46_02900 TatD family hydrolase low > 86
Dickeya dianthicola 67-19 0.78 HGI48_RS18360 protein CreA 0.67 HGI48_RS02415 TatD family hydrolase low > 71
Pantoea sp. MT58 0.78 IAI47_16235 protein CreA 0.64 IAI47_03395 metal-dependent hydrolase low > 76
Dickeya dianthicola ME23 0.78 DZA65_RS19500 protein CreA 0.67 DZA65_RS02520 metal-dependent hydrolase 0.31 23
Enterobacter sp. TBS_079 0.77 MPMX20_00704 hypothetical protein 0.60 MPMX20_00677 putative metal-dependent hydrolase YjjV low > 85
Enterobacter asburiae PDN3 0.77 EX28DRAFT_3607 Uncharacterized protein conserved in bacteria 0.61 EX28DRAFT_3587 Mg-dependent DNase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.76 GFF1065 Conserved uncharacterized protein CreA 0.58 GFF1040 Putative deoxyribonuclease YjjV low > 78
Escherichia coli ECOR38 0.75 HEPCGN_09150 creA protein CreA 0.59 HEPCGN_09265 tatD metal-dependent hydrolase low > 87
Escherichia coli BL21 0.75 ECD_04273 putative periplasmic protein 0.60 ECD_04254 putative DNase low > 61
Escherichia coli ECRC62 0.75 BNILDI_08125 creA protein CreA 0.59 BNILDI_08020 tatD metal-dependent hydrolase low > 75
Escherichia fergusonii Becca 0.75 EFB2_04047 hypothetical protein 0.59 EFB2_04068 putative metal-dependent hydrolase YjjV low > 86
Escherichia coli ECOR27 0.75 NOLOHH_03475 creA protein CreA 0.59 NOLOHH_03580 yjjV metal-dependent hydrolase low > 75
Escherichia coli Nissle 1917 0.75 ECOLIN_RS25235 protein CreA 0.59 ECOLIN_RS25130 metal-dependent hydrolase low > 55
Escherichia coli ECRC98 0.75 JDDGAC_14740 creA protein CreA 0.59 JDDGAC_14855 yjjV metal-dependent hydrolase low > 86
Escherichia coli ECRC100 0.75 OKFHMN_11145 creA protein CreA 0.59 OKFHMN_11260 yjjV metal-dependent hydrolase low > 80
Escherichia coli ECRC101 0.75 MCAODC_01660 creA protein CreA 0.59 MCAODC_01775 yjjV metal-dependent hydrolase low > 87
Escherichia coli BW25113 0.75 b4397 creA hypothetical protein (NCBI) 0.60 b4378 yjjV predicted DNase (NCBI) low > 76
Escherichia coli ECRC102 0.75 NIAGMN_08995 creA protein CreA 0.59 NIAGMN_09110 yjjV metal-dependent hydrolase — —
Escherichia coli ECRC99 0.75 KEDOAH_17010 creA protein CreA 0.59 KEDOAH_16885 yjjV metal-dependent hydrolase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.75 OHPLBJKB_03664 hypothetical protein 0.58 OHPLBJKB_03683 putative metal-dependent hydrolase YjjV low > 73
Pseudomonas stutzeri RCH2 0.63 Psest_3383 Uncharacterized protein conserved in bacteria 0.38 Psest_0728 hydrolase, TatD family low > 67
Pseudomonas sp. S08-1 0.62 OH686_16310 Conserved uncharacterized protein CreA 0.35 OH686_16550 Putative deoxyribonuclease YjjV low > 80
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_15820 hypothetical protein 0.36 AO356_07345 hydrolase TatD low > 104
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0705 CreA 0.36 Psyr_0819 TatD-related deoxyribonuclease low > 86
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1473 Conserved uncharacterized protein CreA 0.36 PfGW456L13_5078 Putative deoxyribonuclease YjjV low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0705 CreA 0.36 Psyr_0819 TatD-related deoxyribonuclease low > 86
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_5104 Conserved uncharacterized protein CreA 0.37 Pf6N2E2_3341 Putative deoxyribonuclease YjjV low > 103
Pseudomonas sp. RS175 0.60 PFR28_03768 hypothetical protein 0.37 PFR28_00103 putative metal-dependent hydrolase YjjV low > 88
Pseudomonas fluorescens SBW25 0.60 PFLU_RS25355 CreA family protein 0.37 PFLU_RS04000 TatD family hydrolase low > 109
Pseudomonas fluorescens SBW25-INTG 0.60 PFLU_RS25355 CreA family protein 0.37 PFLU_RS04000 TatD family hydrolase low > 109
Pseudomonas fluorescens FW300-N1B4 0.60 Pf1N1B4_2801 Conserved uncharacterized protein CreA 0.35 Pf1N1B4_1148 Putative deoxyribonuclease YjjV low > 87
Pseudomonas putida KT2440 0.60 PP_0692 conserved protein of unknown function 0.32 PP_0791 putative hydrolase low > 96
Pseudomonas fluorescens FW300-N2E3 0.60 AO353_14120 hypothetical protein 0.36 AO353_05495 hydrolase TatD low > 101
Pseudomonas simiae WCS417 0.59 PS417_23540 CreA 0.37 PS417_03955 hydrolase TatD low > 88
Variovorax sp. SCN45 0.54 GFF802 Conserved uncharacterized protein CreA 0.27 GFF6080 Putative deoxyribonuclease YjjV low > 127
Variovorax sp. OAS795 0.54 ABID97_RS12385 CreA family protein 0.31 ABID97_RS22725 TatD family hydrolase low > 91
Acidovorax sp. GW101-3H11 0.52 Ac3H11_4062 Conserved uncharacterized protein CreA 0.30 Ac3H11_1737 Putative deoxyribonuclease YjjV low > 79
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS12270 CreA family protein 0.32 ABZR87_RS10420 TatD family hydrolase low > 80
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS04425 CreA family protein 0.33 QEN71_RS05855 TatD family hydrolase low > 153
Herbaspirillum seropedicae SmR1 0.50 HSERO_RS12925 catabolite repression CreA protein 0.32 HSERO_RS13935 DNAase low > 78
Cupriavidus basilensis FW507-4G11 0.49 RR42_RS28965 hypothetical protein 0.31 RR42_RS06110 DNAase — —
Ralstonia solanacearum GMI1000 0.49 RS_RS07400 hypothetical protein 0.31 RS_RS05570 TatD family deoxyribonuclease low > 80
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS14555 CreA family protein 0.31 BPHYT_RS12705 DNAase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.48 H281DRAFT_04326 CreA protein 0.33 H281DRAFT_00492 TatD DNase family protein low > 103
Ralstonia solanacearum UW163 0.47 UW163_RS14045 crea protein 0.31 UW163_RS12230 TatD family deoxyribonuclease — —
Ralstonia solanacearum IBSBF1503 0.47 RALBFv3_RS00715 crea protein 0.31 RALBFv3_RS14760 TatD family deoxyribonuclease low > 76
Ralstonia solanacearum PSI07 0.47 RPSI07_RS16785 hypothetical protein 0.32 RPSI07_RS18600 TatD family deoxyribonuclease low > 81
Shewanella sp. ANA-3 0.28 Shewana3_2415 CreA family protein (RefSeq) 0.31 Shewana3_1038 TatD-related deoxyribonuclease (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_18165 hypothetical protein 0.44 CSW01_11925 TatD family deoxyribonuclease low > 62

Not shown: 11 genomes with orthologs for HER17_RS02775 only; 19 genomes with orthologs for HER17_RS19045 only