Conservation of cofitness between HER17_RS15240 and HER17_RS05050 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS15240 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 1.0 HER17_RS05050 recombination regulator RecX 0.59 8
Dickeya dianthicola ME23 0.98 DZA65_RS06565 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 DZA65_RS17445 recombination regulator RecX low > 75
Dickeya dadantii 3937 0.98 DDA3937_RS06175 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.56 DDA3937_RS16240 recombination regulator RecX — —
Dickeya dianthicola 67-19 0.97 HGI48_RS06220 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.57 HGI48_RS16350 recombination regulator RecX — —
Rahnella sp. WP5 0.95 EX31_RS23125 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.49 EX31_RS07795 recombination regulator RecX low > 89
Serratia liquefaciens MT49 0.95 IAI46_05935 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.54 IAI46_03845 recombination regulator RecX low > 86
Pantoea sp. MT58 0.92 IAI47_14020 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.45 IAI47_04305 regulatory protein RecX low > 76
Enterobacter asburiae PDN3 0.91 EX28DRAFT_2327 rRNA large subunit m3Psi methyltransferase RlmH 0.46 EX28DRAFT_2784 Uncharacterized protein conserved in bacteria — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.91 GFF4549 LSU m3Psi1915 methyltransferase RlmH 0.43 GFF4692 Regulatory protein RecX low > 78
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_03070 Ribosomal RNA large subunit methyltransferase H 0.47 OHPLBJKB_01036 Regulatory protein RecX — —
Escherichia coli BL21 0.90 ECD_00605 23S rRNA m(3)Psi1915 pseudouridine methyltransferase, SAM-dependent 0.47 ECD_02548 regulatory protein for RecA — —
Escherichia coli Nissle 1917 0.90 ECOLIN_RS03465 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 ECOLIN_RS15055 recombination regulator RecX — —
Enterobacter sp. TBS_079 0.90 MPMX20_01295 Ribosomal RNA large subunit methyltransferase H 0.47 MPMX20_03579 Regulatory protein RecX low > 85
Escherichia coli BW25113 0.90 b0636 ybeA hypothetical protein (NCBI) 0.47 b2698 recX RecA regulator RecX (NCBI) low > 76
Klebsiella michiganensis M5al 0.90 BWI76_RS08040 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.43 BWI76_RS22175 recombination regulator RecX — —
Erwinia tracheiphila SCR3 0.90 LU632_RS16370 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.40 LU632_RS15730 recombination regulator RecX low > 74
Escherichia fergusonii Becca 0.90 EFB2_03456 Ribosomal RNA large subunit methyltransferase H 0.47 EFB2_01226 Regulatory protein RecX low > 86
Escherichia coli ECRC101 0.90 MCAODC_26575 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 MCAODC_11235 recX recombination regulator RecX low > 87
Escherichia coli ECRC102 0.90 NIAGMN_05415 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 NIAGMN_18480 recX recombination regulator RecX — —
Escherichia coli ECRC100 0.90 OKFHMN_07360 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 OKFHMN_20710 recX recombination regulator RecX low > 80
Escherichia coli ECOR27 0.90 NOLOHH_23735 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 NOLOHH_12550 recX recombination regulator RecX low > 75
Escherichia coli ECRC98 0.90 JDDGAC_11005 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 JDDGAC_24375 recX recombination regulator RecX — —
Escherichia coli ECRC62 0.90 BNILDI_21745 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 BNILDI_11110 recX recombination regulator RecX — —
Escherichia coli ECOR38 0.90 HEPCGN_00915 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 HEPCGN_19905 recX recombination regulator RecX low > 87
Escherichia coli ECRC99 0.90 KEDOAH_20610 rlmH 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.47 KEDOAH_07425 recX recombination regulator RecX — —
Vibrio cholerae E7946 ATCC 55056 0.83 CSW01_04865 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 CSW01_02880 regulatory protein RecX low > 62
Shewanella loihica PV-4 0.81 Shew_2934 SPOUT methyltransferase superfamily protein (RefSeq) 0.25 Shew_1216 regulatory protein RecX (RefSeq) low > 60
Shewanella amazonensis SB2B 0.80 Sama_2587 rRNA large subunit methyltransferase (RefSeq) 0.21 Sama_1047 hypothetical protein (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.63 B158DRAFT_0085 rRNA large subunit m3Psi methyltransferase RlmH 0.23 B158DRAFT_1532 Uncharacterized protein conserved in bacteria low > 40
Pseudomonas sp. S08-1 0.63 OH686_09325 rRNA large subunit m3Psi methyltransferase RlmH 0.26 OH686_18210 Regulatory protein RecX low > 80
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4366 Protein of unknown function DUF163 0.22 Psyr_1379 Regulatory protein RecX — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4366 Protein of unknown function DUF163 0.22 Psyr_1379 Regulatory protein RecX — —
Pseudomonas stutzeri RCH2 0.61 Psest_0511 rRNA large subunit m3Psi methyltransferase RlmH 0.23 Psest_2871 Uncharacterized protein conserved in bacteria — —
Pseudomonas putida KT2440 0.61 PP_4808 23S rRNA m3psi1915 methyltransferase 0.22 PP_1630 Regulatory protein RecX low > 96
Pseudomonas sp. RS175 0.61 PFR28_03869 Ribosomal RNA large subunit methyltransferase H 0.23 PFR28_00473 Regulatory protein RecX low > 88
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_15305 50S rRNA methyltransferase 0.23 AO356_05665 recombinase RecX — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_4996 LSU m3Psi1915 methyltransferase RlmH 0.23 Pf6N2E2_2992 Regulatory protein RecX low > 103
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_06480 50S rRNA methyltransferase 0.23 AO353_16810 recombinase RecX low > 101
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_2691 LSU m3Psi1915 methyltransferase RlmH 0.23 Pf1N1B4_3144 Regulatory protein RecX — —
Pseudomonas simiae WCS417 0.61 PS417_24730 50S rRNA methyltransferase 0.24 PS417_05820 recombinase RecX — —
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_1359 LSU m3Psi1915 methyltransferase RlmH 0.24 PfGW456L13_4667 Regulatory protein RecX low > 87
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 PFLU_RS05890 recombination regulator RecX low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS26660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 PFLU_RS05890 recombination regulator RecX — —
Lysobacter sp. OAE881 0.50 ABIE51_RS06755 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.24 ABIE51_RS07805 recombination regulator RecX — —
Herbaspirillum seropedicae SmR1 0.49 HSERO_RS17780 50S rRNA methyltransferase 0.17 HSERO_RS03275 regulatory protein RecX low > 78
Acinetobacter radioresistens SK82 0.48 MPMX26_02301 Ribosomal RNA large subunit methyltransferase H 0.21 MPMX26_01307 Regulatory protein RecX low > 36
Xanthomonas campestris pv. campestris strain 8004 0.46 Xcc-8004.1876.1 LSU m3Psi1915 methyltransferase RlmH 0.19 Xcc-8004.3108.1 Regulatory protein RecX — —
Ralstonia solanacearum GMI1000 0.46 RS_RS11015 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.17 RS_RS02765 regulatory protein RecX — —
Ralstonia solanacearum PSI07 0.46 RPSI07_RS13660 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.17 RPSI07_RS21255 recombination regulator RecX — —
Ralstonia sp. UNC404CL21Col 0.46 ABZR87_RS15430 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.17 ABZR87_RS07970 recombination regulator RecX low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF4529 LSU m3Psi1915 methyltransferase RlmH 0.16 GFF2501 Regulatory protein RecX — —
Castellaniella sp019104865 MT123 0.45 ABCV34_RS02530 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH 0.19 ABCV34_RS04455 recombination regulator RecX low > 48
Dechlorosoma suillum PS 0.45 Dsui_0451 hypothetical protein 0.18 Dsui_0706 hypothetical protein low > 51

Not shown: 44 genomes with orthologs for HER17_RS15240 only; 0 genomes with orthologs for HER17_RS05050 only