Conservation of cofitness between HER17_RS04200 and HER17_RS01540 in Pectobacterium carotovorum WPP14

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pectobacterium carotovorum WPP14 1.0 HER17_RS04200 7-carboxy-7-deazaguanine synthase QueE 1.0 HER17_RS01540 4-alpha-glucanotransferase 0.72 2
Serratia liquefaciens MT49 0.86 IAI46_03675 7-carboxy-7-deazaguanine synthase QueE 0.59 IAI46_23840 4-alpha-glucanotransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.86 GFF4831 Queuosine Biosynthesis QueE Radical SAM 0.57 GFF601 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) low > 78
Dickeya dadantii 3937 0.86 DDA3937_RS16970 7-carboxy-7-deazaguanine synthase QueE 0.69 DDA3937_RS19660 4-alpha-glucanotransferase low > 74
Escherichia coli ECRC99 0.85 KEDOAH_07830 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 KEDOAH_11160 malQ 4-alpha-glucanotransferase — —
Escherichia coli ECRC100 0.85 OKFHMN_20300 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 OKFHMN_16980 malQ 4-alpha-glucanotransferase low > 80
Escherichia coli BW25113 0.85 b2777 ygcF hypothetical protein (NCBI) 0.56 b3416 malQ 4-alpha-glucanotransferase (amylomaltase) (NCBI) low > 76
Escherichia coli BL21 0.85 ECD_02622 7-carboxy-7-deazaguanine synthase; queosine biosynthesis 0.56 ECD_03268 4-alpha-glucanotransferase (amylomaltase) low > 61
Escherichia coli ECRC62 0.85 BNILDI_10675 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 BNILDI_02750 malQ 4-alpha-glucanotransferase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.85 OHPLBJKB_00957 7-carboxy-7-deazaguanine synthase 0.56 OHPLBJKB_00287 4-alpha-glucanotransferase low > 73
Klebsiella michiganensis M5al 0.85 BWI76_RS22780 7-carboxy-7-deazaguanine synthase QueE 0.57 BWI76_RS26160 4-alpha-glucanotransferase (EC 2.4.1.25) (from data) low > 92
Escherichia coli ECRC102 0.85 NIAGMN_18070 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 NIAGMN_14750 malQ 4-alpha-glucanotransferase — —
Escherichia coli ECRC98 0.85 JDDGAC_23965 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 JDDGAC_20610 malQ 4-alpha-glucanotransferase low > 86
Escherichia coli ECRC101 0.85 MCAODC_10825 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 MCAODC_07510 malQ 4-alpha-glucanotransferase low > 87
Escherichia coli ECOR27 0.85 NOLOHH_12170 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 NOLOHH_08765 malQ 4-alpha-glucanotransferase low > 75
Escherichia coli Nissle 1917 0.85 ECOLIN_RS15475 7-carboxy-7-deazaguanine synthase QueE 0.56 ECOLIN_RS19510 4-alpha-glucanotransferase low > 55
Escherichia fergusonii Becca 0.85 EFB2_01141 7-carboxy-7-deazaguanine synthase 0.56 EFB2_00412 4-alpha-glucanotransferase low > 86
Escherichia coli ECOR38 0.85 HEPCGN_19205 queE 7-carboxy-7-deazaguanine synthase QueE 0.56 HEPCGN_15790 malQ 4-alpha-glucanotransferase low > 87
Enterobacter sp. TBS_079 0.84 MPMX20_03645 7-carboxy-7-deazaguanine synthase 0.58 MPMX20_04303 4-alpha-glucanotransferase low > 85
Enterobacter asburiae PDN3 0.84 EX28DRAFT_2855 putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE 0.58 EX28DRAFT_4126 4-alpha-glucanotransferase low > 76
Rahnella sp. WP5 0.83 EX31_RS07920 7-carboxy-7-deazaguanine synthase QueE 0.59 EX31_RS08310 4-alpha-glucanotransferase low > 89
Pantoea sp. MT58 0.80 IAI47_04140 7-carboxy-7-deazaguanine synthase QueE 0.53 IAI47_20495 4-alpha-glucanotransferase low > 76
Dickeya dianthicola 67-19 0.79 HGI48_RS17035 7-carboxy-7-deazaguanine synthase QueE 0.67 HGI48_RS19790 4-alpha-glucanotransferase low > 71
Dickeya dianthicola ME23 0.79 DZA65_RS18110 7-carboxy-7-deazaguanine synthase QueE 0.67 DZA65_RS20880 4-alpha-glucanotransferase low > 75
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_06870 7-carboxy-7-deazaguanine synthase QueE 0.43 CSW01_14120 4-alpha-glucanotransferase low > 62
Alteromonas macleodii MIT1002 0.58 MIT1002_01264 7-carboxy-7-deazaguanine synthase 0.42 MIT1002_02400 4-alpha-glucanotransferase low > 70
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS41925 7-carboxy-7-deazaguanine synthase QueE 0.26 QEN71_RS17715 4-alpha-glucanotransferase low > 153
Burkholderia phytofirmans PsJN 0.21 BPHYT_RS01505 7-cyano-7-deazaguanine reductase 0.25 BPHYT_RS33795 4-alpha-glucanotransferase low > 109
Paraburkholderia graminis OAS925 0.21 ABIE53_000397 7-carboxy-7-deazaguanine synthase 0.25 ABIE53_004823 4-alpha-glucanotransferase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.20 H281DRAFT_02231 7-carboxy-7-deazaguanine synthase, Cx14CxxC type 0.25 H281DRAFT_06053 4-alpha-glucanotransferase low > 103
Magnetospirillum magneticum AMB-1 0.20 AMB_RS01255 7-carboxy-7-deazaguanine synthase 0.33 AMB_RS15420 4-alpha-glucanotransferase low > 64
Ralstonia sp. UNC404CL21Col 0.19 ABZR87_RS12145 7-carboxy-7-deazaguanine synthase 0.21 ABZR87_RS17200 4-alpha-glucanotransferase low > 80
Azospirillum brasilense Sp245 0.19 AZOBR_RS04155 radical SAM protein 0.33 AZOBR_RS09480 4-alpha-glucanotransferase low > 97
Rhodopseudomonas palustris CGA009 0.18 TX73_006110 7-carboxy-7-deazaguanine synthase 0.24 TX73_018870 4-alpha-glucanotransferase 0.34 68
Pseudomonas simiae WCS417 0.18 PS417_22405 7-carboxy-7-deazaguanine synthase 0.23 PS417_14490 4-alpha-glucanotransferase low > 88
Herbaspirillum seropedicae SmR1 0.18 HSERO_RS11035 7-cyano-7-deazaguanine reductase 0.21 HSERO_RS12495 4-alpha-glucanotransferase low > 78
Pseudomonas fluorescens SBW25 0.18 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.23 PFLU_RS16420 4-alpha-glucanotransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.18 PFLU_RS24045 7-carboxy-7-deazaguanine synthase QueE 0.23 PFLU_RS16420 4-alpha-glucanotransferase low > 109
Ralstonia solanacearum GMI1000 0.17 RS_RS07295 7-carboxy-7-deazaguanine synthase 0.20 RS_RS18290 4-alpha-glucanotransferase low > 80
Ralstonia solanacearum PSI07 0.17 RPSI07_RS16890 7-carboxy-7-deazaguanine synthase 0.20 RPSI07_RS00870 4-alpha-glucanotransferase — —
Pseudomonas sp. RS175 0.17 PFR28_03404 7-carboxy-7-deazaguanine synthase 0.23 PFR28_02147 4-alpha-glucanotransferase low > 88
Ralstonia solanacearum IBSBF1503 0.17 RALBFv3_RS00615 7-carboxy-7-deazaguanine synthase 0.20 RALBFv3_RS22320 4-alpha-glucanotransferase — —
Ralstonia solanacearum UW163 0.17 UW163_RS13945 7-carboxy-7-deazaguanine synthase 0.20 UW163_RS22865 4-alpha-glucanotransferase — —
Pseudomonas fluorescens FW300-N2C3 0.17 AO356_18065 7-carboxy-7-deazaguanine synthase 0.24 AO356_26015 4-alpha-glucanotransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.17 Pf6N2E2_5545 Queuosine Biosynthesis QueE Radical SAM 0.23 Pf6N2E2_1076 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) low > 103
Pseudomonas fluorescens FW300-N1B4 0.17 Pf1N1B4_629 Queuosine Biosynthesis QueE Radical SAM 0.22 Pf1N1B4_4685 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) low > 87
Pseudomonas fluorescens FW300-N2E3 0.17 AO353_03540 7-carboxy-7-deazaguanine synthase 0.23 AO353_23765 4-alpha-glucanotransferase low > 101
Pseudomonas sp. S08-1 0.17 OH686_19175 7-carboxy-7-deazaguanine synthase 0.22 OH686_01290 4-alpha-glucanotransferase low > 80
Pseudomonas putida KT2440 0.16 PP_1225 7-carboxy-7-deazaguanine synthase 0.21 PP_4052 4-alpha-glucanotransferase low > 96
Pseudomonas fluorescens GW456-L13 0.16 PfGW456L13_1861 Queuosine Biosynthesis QueE Radical SAM 0.22 PfGW456L13_3247 4-alpha-glucanotransferase (amylomaltase) (EC 2.4.1.25) low > 87
Pseudomonas stutzeri RCH2 0.15 Psest_1505 Organic radical activating enzymes 0.23 Psest_2170 4-alpha-glucanotransferase low > 67
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_1418 Radical SAM 0.22 Psyr_2994 Glycoside hydrolase, family 77 — —
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_1418 Radical SAM 0.22 Psyr_2994 Glycoside hydrolase, family 77 low > 86

Not shown: 31 genomes with orthologs for HER17_RS04200 only; 2 genomes with orthologs for HER17_RS01540 only