Conservation of cofitness between Psest_3770 and Psest_0959 in Pseudomonas stutzeri RCH2

47 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas stutzeri RCH2 1.0 Psest_3770 secondary thiamine-phosphate synthase enzyme 1.0 Psest_0959 Uncharacterized protein conserved in bacteria 0.28 10
Pseudomonas fluorescens SBW25-INTG 0.86 PFLU_RS29295 YjbQ family protein 0.48 PFLU_RS25925 RnfH family protein low > 109
Pseudomonas fluorescens SBW25 0.86 PFLU_RS29295 YjbQ family protein 0.48 PFLU_RS25925 RnfH family protein low > 109
Pseudomonas fluorescens FW300-N1B4 0.86 Pf1N1B4_2168 FIG004064: hypothetical protein 0.58 Pf1N1B4_1181 UPF0125 protein yfjF low > 87
Pseudomonas fluorescens GW456-L13 0.85 PfGW456L13_839 FIG004064: hypothetical protein 0.50 PfGW456L13_5109 UPF0125 protein yfjF low > 87
Pseudomonas sp. RS175 0.85 PFR28_04381 hypothetical protein 0.45 PFR28_00068 hypothetical protein low > 88
Pseudomonas fluorescens FW300-N2C3 0.85 AO356_12710 hypothetical protein 0.44 AO356_07525 protein RnfH — —
Pseudomonas fluorescens FW300-N2E3 0.85 AO353_09065 hypothetical protein 0.50 AO353_05675 protein RnfH low > 101
Pseudomonas fluorescens FW300-N2E2 0.84 Pf6N2E2_4413 FIG004064: hypothetical protein 0.41 Pf6N2E2_3374 UPF0125 protein yfjF — —
Pseudomonas sp. S08-1 0.84 OH686_13770 UPF0047 protein YjbQ 0.64 OH686_17035 UPF0125 protein RatB low > 80
Pseudomonas simiae WCS417 0.83 PS417_27610 hypothetical protein 0.51 PS417_24085 protein RnfH low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0188 Protein of unknown function UPF0047 0.46 Psyr_4200 Protein of unknown function UPF0125 low > 86
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0188 Protein of unknown function UPF0047 0.46 Psyr_4200 Protein of unknown function UPF0125 low > 86
Shewanella amazonensis SB2B 0.65 Sama_1665 hypothetical protein (RefSeq) 0.42 Sama_2386 hypothetical protein (RefSeq) — —
Pectobacterium carotovorum WPP14 0.64 HER17_RS03555 secondary thiamine-phosphate synthase enzyme YjbQ 0.36 HER17_RS17430 RnfH family protein low > 75
Marinobacter adhaerens HP15 0.64 HP15_721 protein belonging to uncharacterized protein family UPF0047 0.40 HP15_3087 protein belonging to uncharacterized protein family UPF0125 low > 73
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_01960 hypothetical protein 0.39 CSW01_04385 RnfH family protein — —
Escherichia coli ECRC100 0.62 OKFHMN_12905 yjbQ UPF0047 protein YjbQ 0.37 OKFHMN_21135 rnfH RnfH family protein low > 80
Pantoea sp. MT58 0.62 IAI47_17830 YjbQ family protein 0.44 IAI47_04800 RnfH family protein low > 76
Escherichia coli ECRC102 0.62 NIAGMN_10750 yjbQ UPF0047 protein YjbQ 0.37 NIAGMN_18905 rnfH RnfH family protein — —
Escherichia coli BL21 0.62 ECD_03928 thiamine phosphate synthase 0.38 ECD_02506 UPF0125 family protein low > 61
Escherichia coli ECRC99 0.62 KEDOAH_15245 yjbQ UPF0047 protein YjbQ 0.37 KEDOAH_07085 rnfH RnfH family protein — —
Escherichia fergusonii Becca 0.62 EFB2_04535 hypothetical protein 0.38 EFB2_01275 Persistence and stress-resistance antitoxin PasI 0.29 83
Escherichia coli BW25113 0.62 b4056 yjbQ hypothetical protein (NCBI) 0.38 b2618 b2618 orf, hypothetical protein (VIMSS) low > 76
Escherichia coli Nissle 1917 0.62 ECOLIN_RS23475 secondary thiamine-phosphate synthase enzyme YjbQ 0.38 ECOLIN_RS14785 RnfH family protein low > 55
Escherichia coli ECRC101 0.62 MCAODC_03415 yjbQ UPF0047 protein YjbQ 0.37 MCAODC_11660 rnfH RnfH family protein low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.62 OHPLBJKB_03985 hypothetical protein 0.38 OHPLBJKB_01089 hypothetical protein low > 73
Escherichia coli ECOR38 0.62 HEPCGN_11520 yjbQ UPF0047 protein YjbQ 0.38 HEPCGN_20255 rnfH RnfH family protein low > 87
Escherichia coli ECRC98 0.62 JDDGAC_16540 yjbQ UPF0047 protein YjbQ 0.37 JDDGAC_24800 rnfH RnfH family protein low > 86
Escherichia coli ECOR27 0.62 NOLOHH_05155 yjbQ UPF0047 protein YjbQ 0.38 NOLOHH_12805 rnfH RnfH family protein low > 75
Escherichia coli ECRC62 0.61 BNILDI_06370 yjbQ UPF0047 protein YjbQ 0.38 BNILDI_11610 rnfH RnfH family protein low > 75
Shewanella loihica PV-4 0.61 Shew_1893 hypothetical protein (RefSeq) 0.46 Shew_1270 hypothetical protein (RefSeq) — —
Enterobacter asburiae PDN3 0.60 EX28DRAFT_4248 secondary thiamine-phosphate synthase enzyme 0.40 EX28DRAFT_2721 Uncharacterized protein conserved in bacteria low > 76
Enterobacter sp. TBS_079 0.60 MPMX20_00274 hypothetical protein 0.38 MPMX20_03488 Persistence and stress-resistance antitoxin PasI low > 85
Klebsiella michiganensis M5al 0.59 BWI76_RS01935 thiamin phosphate synthase 0.38 BWI76_RS21570 RnfH family protein low > 92
Dickeya dadantii 3937 0.57 DDA3937_RS17595 YjbQ family protein 0.42 DDA3937_RS04315 RnfH family protein low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF1425 FIG004064: hypothetical protein 0.36 GFF4160 UPF0125 protein yfjF low > 78
Serratia liquefaciens MT49 0.52 IAI46_22925 YjbQ family protein 0.38 IAI46_19645 RnfH family protein low > 86
Paraburkholderia graminis OAS925 0.46 ABIE53_005988 secondary thiamine-phosphate synthase enzyme 0.41 ABIE53_002480 putative ubiquitin-RnfH superfamily antitoxin RatB of RatAB toxin-antitoxin module low > 113
Paraburkholderia sabiae LMG 24235 0.45 QEN71_RS15455 secondary thiamine-phosphate synthase enzyme YjbQ 0.39 QEN71_RS06530 RnfH family protein — —
Dechlorosoma suillum PS 0.45 Dsui_0738 secondary thiamine-phosphate synthase enzyme 0.42 Dsui_2673 hypothetical protein low > 51
Dyella japonica UNC79MFTsu3.2 0.44 ABZR86_RS10440 secondary thiamine-phosphate synthase enzyme YjbQ 0.38 ABZR86_RS05690 RnfH family protein low > 74
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_2014 secondary thiamine-phosphate synthase enzyme 0.40 B158DRAFT_0971 Uncharacterized protein conserved in bacteria — —
Rhodanobacter denitrificans FW104-10B01 0.43 LRK54_RS04275 secondary thiamine-phosphate synthase enzyme YjbQ 0.33 LRK54_RS17935 RnfH family protein low > 59
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_02804 secondary thiamine-phosphate synthase enzyme 0.38 H281DRAFT_00632 hypothetical protein — —
Rhodanobacter sp. FW510-T8 0.43 OKGIIK_11150 yjbQ secondary thiamine-phosphate synthase 0.33 OKGIIK_07365 RnfH family protein low > 52
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS26250 hypothetical protein 0.43 BPHYT_RS12030 protein RnfH — —
Rhodanobacter denitrificans MT42 0.43 LRK55_RS04050 secondary thiamine-phosphate synthase enzyme YjbQ 0.33 LRK55_RS17790 RnfH family protein low > 63

Not shown: 19 genomes with orthologs for Psest_3770 only; 12 genomes with orthologs for Psest_0959 only