Conservation of cofitness between GFF1592 and GFF89 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

51 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1592 Multidrug resistance protein A 1.0 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.52 5
Enterobacter sp. TBS_079 0.90 MPMX20_03563 Multidrug export protein EmrA 0.84 MPMX20_00829 Poly(A) polymerase I low > 85
Escherichia coli Nissle 1917 0.90 ECOLIN_RS14965 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB low > 55
Escherichia coli ECOR38 0.90 HEPCGN_19975 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli BW25113 0.90 b2685 emrA multidrug efflux system (NCBI) 0.88 b0143 pcnB poly(A) polymerase I (VIMSS) low > 76
Escherichia coli BL21 0.90 ECD_02540 multidrug efflux system 0.88 ECD_00142 poly(A) polymerase low > 61
Escherichia coli ECRC62 0.90 BNILDI_11180 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB low > 75
Escherichia fergusonii Becca 0.90 EFB2_01243 Multidrug export protein EmrA 0.88 EFB2_03901 Poly(A) polymerase I low > 86
Escherichia coli HS(pFamp)R (ATCC 700891) 0.90 OHPLBJKB_01048 Multidrug export protein EmrA 0.87 OHPLBJKB_03519 Poly(A) polymerase I low > 73
Escherichia coli ECOR27 0.90 NOLOHH_12620 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB low > 75
Escherichia coli ECRC98 0.89 JDDGAC_24445 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.85 25
Escherichia coli ECRC99 0.89 KEDOAH_07355 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC101 0.89 MCAODC_11305 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli ECRC102 0.89 NIAGMN_18550 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECRC100 0.89 OKFHMN_20780 emrA multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.88 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB low > 80
Enterobacter asburiae PDN3 0.89 EX28DRAFT_2768 efflux pump membrane protein (multidrug resistance protein A) 0.85 EX28DRAFT_3732 poly(A) polymerase low > 76
Klebsiella michiganensis M5al 0.84 BWI76_RS22095 multidrug export protein EmrA 0.84 BWI76_RS05005 polynucleotide adenylyltransferase low > 92
Pantoea sp. MT58 0.72 IAI47_04500 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.78 IAI47_15645 polynucleotide adenylyltransferase PcnB low > 76
Serratia liquefaciens MT49 0.72 IAI46_20000 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.76 IAI46_21220 polynucleotide adenylyltransferase PcnB low > 86
Pectobacterium carotovorum WPP14 0.71 HER17_RS04465 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.76 HER17_RS05570 polynucleotide adenylyltransferase PcnB low > 75
Dickeya dadantii 3937 0.69 DDA3937_RS16760 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.77 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB low > 74
Dickeya dianthicola ME23 0.68 DZA65_RS17905 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.77 DZA65_RS17145 polynucleotide adenylyltransferase PcnB low > 75
Dickeya dianthicola 67-19 0.67 HGI48_RS16830 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA 0.77 HGI48_RS16060 polynucleotide adenylyltransferase PcnB low > 71
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS11230 HlyD family secretion protein 0.37 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB low > 80
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_08530 emrA EmrA/EmrK family multidrug efflux transporter periplasmic adaptor subunit 0.46 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase low > 52
Pseudomonas fluorescens SBW25-INTG 0.40 PFLU_RS18900 HlyD family efflux transporter periplasmic adaptor subunit 0.41 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Pseudomonas fluorescens SBW25 0.40 PFLU_RS18900 HlyD family efflux transporter periplasmic adaptor subunit 0.41 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Pseudomonas syringae pv. syringae B728a ΔmexB 0.40 Psyr_1730 Secretion protein HlyD 0.42 Psyr_0830 Poly(A) polymerase low > 86
Pseudomonas syringae pv. syringae B728a 0.40 Psyr_1730 Secretion protein HlyD 0.42 Psyr_0830 Poly(A) polymerase low > 86
Pseudomonas fluorescens FW300-N1B4 0.40 Pf1N1B4_4001 Membrane fusion component of tripartite multidrug resistance system 0.42 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) low > 87
Pseudomonas fluorescens FW300-N2E3 0.40 AO353_27845 hemolysin D 0.41 AO353_14395 poly(A) polymerase low > 101
Castellaniella sp019104865 MT123 0.40 ABCV34_RS05945 HlyD family efflux transporter periplasmic adaptor subunit 0.38 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB low > 48
Pseudomonas simiae WCS417 0.40 PS417_16915 hemolysin D 0.41 PS417_23900 poly(A) polymerase low > 88
Pseudomonas fluorescens FW300-N2E2 0.40 Pf6N2E2_148 Membrane fusion component of tripartite multidrug resistance system 0.41 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) low > 103
Acidovorax sp. GW101-3H11 0.40 Ac3H11_2351 Membrane fusion component of tripartite multidrug resistance system 0.32 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) — —
Pseudomonas sp. RS175 0.40 PFR28_02748 Multidrug export protein EmrA 0.41 PFR28_03719 Poly(A) polymerase I low > 88
Rhodanobacter denitrificans FW104-10B01 0.40 LRK54_RS07785 HlyD family efflux transporter periplasmic adaptor subunit 0.46 LRK54_RS15105 polynucleotide adenylyltransferase PcnB low > 59
Rhodanobacter denitrificans MT42 0.40 LRK55_RS07515 HlyD family efflux transporter periplasmic adaptor subunit 0.46 LRK55_RS14820 polynucleotide adenylyltransferase PcnB low > 63
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS14770 HlyD family efflux transporter periplasmic adaptor subunit 0.45 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB low > 74
Pseudomonas putida KT2440 0.39 PP_3549 multidrug efflux transport system - membrane fusion protein 0.42 PP_4697 poly(A) polymerase low > 96
Variovorax sp. OAS795 0.39 ABID97_RS20395 efflux RND transporter periplasmic adaptor subunit 0.33 ABID97_RS08710 polynucleotide adenylyltransferase PcnB low > 91
Variovorax sp. SCN45 0.39 GFF4770 Multidrug efflux system EmrAB-OMF, membrane fusion component EmrA 0.33 GFF3943 Poly(A) polymerase (EC 2.7.7.19) low > 127
Lysobacter sp. OAE881 0.39 ABIE51_RS07710 efflux RND transporter periplasmic adaptor subunit 0.43 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB low > 62
Pseudomonas fluorescens GW456-L13 0.38 PfGW456L13_2605 Membrane fusion component of tripartite multidrug resistance system 0.41 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) low > 87
Xanthomonas campestris pv. campestris strain 8004 0.37 Xcc-8004.3525.1 Membrane fusion component of tripartite multidrug resistance system 0.43 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) low > 74
Pseudomonas fluorescens FW300-N2C3 0.37 AO356_01030 hemolysin D 0.41 AO356_16070 poly(A) polymerase low > 104
Acinetobacter radioresistens SK82 0.34 MPMX26_02395 putative multidrug resistance protein EmrK 0.30 MPMX26_00543 Poly(A) polymerase I low > 36
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_07070 HlyD family secretion protein 0.58 CSW01_03145 polynucleotide adenylyltransferase PcnB low > 62
Shewanella sp. ANA-3 0.20 Shewana3_2225 secretion protein HlyD family protein (RefSeq) 0.53 Shewana3_3406 poly(A) polymerase (RefSeq) low > 73
Pseudomonas sp. S08-1 0.19 OH686_04565 Membrane fusion component of MSF-type tripartite multidrug efflux system 0.43 OH686_17255 Poly(A) polymerase low > 80
Shewanella loihica PV-4 0.18 Shew_1543 secretion protein HlyD family protein (RefSeq) 0.52 Shew_3131 poly(A) polymerase (RefSeq) low > 60
Shewanella amazonensis SB2B 0.17 Sama_0402 HlyD family secretion protein (RefSeq) 0.52 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) low > 62

Not shown: 32 genomes with orthologs for GFF1592 only; 7 genomes with orthologs for GFF89 only