Conservation of cofitness between GFF1934 and GFF603 in Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 1.0 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 1.0 GFF603 NfuA Fe-S protein maturation 0.86 4
Escherichia coli BW25113 0.97 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.99 b3414 gntY predicted gluconate transport associated protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.97 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.99 OHPLBJKB_00289 Fe/S biogenesis protein NfuA low > 73
Escherichia coli ECOR27 0.97 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.99 NOLOHH_08775 NfuA family Fe-S biogenesis protein low > 57
Escherichia coli BL21 0.97 ECD_02243 tRNA pseudouridine(38-40) synthase 0.99 ECD_03266 Fe/S biogenesis protein, putative scaffold/chaperone protein — —
Escherichia coli ECRC98 0.96 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.99 JDDGAC_20620 NfuA family Fe-S biogenesis protein — —
Escherichia coli ECRC101 0.96 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.99 MCAODC_07520 NfuA family Fe-S biogenesis protein — —
Escherichia coli ECRC101 0.96 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.99 OKFHMN_16990 NfuA family Fe-S biogenesis protein — —
Escherichia coli ECOR38 0.96 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.99 HEPCGN_15800 NfuA family Fe-S biogenesis protein 0.91 10
Escherichia coli ECRC99 0.96 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.99 KEDOAH_11150 NfuA family Fe-S biogenesis protein — —
Escherichia coli Nissle 1917 0.96 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.99 ECOLIN_RS19500 Fe-S biogenesis protein NfuA low > 52
Escherichia coli ECRC102 0.96 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.99 NIAGMN_14760 NfuA family Fe-S biogenesis protein — —
Escherichia coli ECRC62 0.96 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.99 BNILDI_02740 NfuA family Fe-S biogenesis protein — —
Escherichia fergusonii Becca 0.96 EFB2_01540 tRNA pseudouridine synthase A 0.99 EFB2_00414 Fe/S biogenesis protein NfuA low > 86
Enterobacter sp. TBS_079 0.92 MPMX20_03253 tRNA pseudouridine synthase A 0.96 MPMX20_04301 Fe/S biogenesis protein NfuA low > 85
Enterobacter asburiae PDN3 0.92 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.98 EX28DRAFT_4128 IscR-regulated protein YhgI — —
Klebsiella michiganensis M5al 0.90 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.95 BWI76_RS26620 Fe-S biogenesis protein NfuA low > 92
Pectobacterium carotovorum WPP14 0.81 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.91 HER17_RS01545 Fe-S biogenesis protein NfuA low > 75
Pantoea sp. MT58 0.80 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.89 IAI47_01780 Fe-S biogenesis protein NfuA low > 76
Erwinia tracheiphila SCR3 0.80 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.88 LU632_RS22985 nfuA Fe-S biogenesis protein NfuA — —
Serratia liquefaciens MT49 0.80 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.91 IAI46_23835 Fe-S biogenesis protein NfuA low > 86
Dickeya dianthicola ME23 0.79 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.91 DZA65_RS20875 Fe-S biogenesis protein NfuA low > 75
Dickeya dianthicola 67-19 0.79 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.91 HGI48_RS19785 Fe-S biogenesis protein NfuA low > 71
Dickeya dadantii 3937 0.79 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.91 DDA3937_RS19655 Fe-S biogenesis protein NfuA — —
Rahnella sp. WP5 0.73 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.89 EX31_RS04925 Fe-S biogenesis protein NfuA low > 89
Vibrio cholerae E7946 ATCC 55056 0.73 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.77 CSW01_13725 Fe-S biogenesis protein NfuA — —
Shewanella sp. ANA-3 0.70 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.76 Shewana3_4003 putative DNA uptake protein (RefSeq) — —
Shewanella amazonensis SB2B 0.69 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.73 Sama_3502 putative DNA uptake protein (RefSeq) — —
Shewanella loihica PV-4 0.69 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.77 Shew_0106 putative DNA uptake protein (RefSeq) — —
Alteromonas macleodii MIT1002 0.65 MIT1002_02529 tRNA pseudouridine synthase A 0.78 MIT1002_04019 Fe/S biogenesis protein NfuA — —
Kangiella aquimarina DSM 16071 0.58 B158DRAFT_1483 pseudouridylate synthase I 0.63 B158DRAFT_0853 IscR-regulated protein YhgI — —
Pseudomonas sp. S08-1 0.56 OH686_04450 tRNA pseudouridine(38-40) synthase 0.51 OH686_03315 [4Fe-4S] cluster carrier protein NfuA — —
Pseudomonas putida KT2440 0.56 PP_1994 tRNA pseudouridine (38-40)synthase 0.50 PP_2378 Fe/S biogenesis protein NfuA 0.31 41
Pseudomonas fluorescens SBW25 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.49 PFLU_RS13010 Fe-S biogenesis protein NfuA 0.69 4
Pseudomonas fluorescens SBW25-INTG 0.55 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.49 PFLU_RS13010 Fe-S biogenesis protein NfuA low > 109
Pseudomonas fluorescens GW456-L13 0.54 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.49 PfGW456L13_2849 NfuA Fe-S protein maturation — —
Pseudomonas simiae WCS417 0.54 PS417_18565 pseudouridine synthase 0.48 PS417_12320 amino acid ABC transporter substrate-binding protein — —
Pseudomonas fluorescens FW300-N1B4 0.54 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.48 Pf1N1B4_5659 NfuA Fe-S protein maturation 0.33 45
Pseudomonas fluorescens FW300-N2E2 0.54 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.49 Pf6N2E2_2066 NfuA Fe-S protein maturation — —
Pseudomonas fluorescens FW300-N2C3 0.54 AO356_21435 pseudouridine synthase 0.49 AO356_00535 Fe/S biogenesis protein NfuA — —
Pseudomonas sp. RS175 0.53 PFR28_02817 tRNA pseudouridine synthase A 0.49 PFR28_01371 Fe/S biogenesis protein NfuA — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.53 Psyr_1662 tRNA pseudouridine synthase 0.45 Psyr_2466 HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal — —
Pseudomonas fluorescens FW300-N2E3 0.53 AO353_20660 pseudouridine synthase 0.48 AO353_21625 Fe/S biogenesis protein NfuA low > 101
Pseudomonas syringae pv. syringae B728a 0.53 Psyr_1662 tRNA pseudouridine synthase 0.45 Psyr_2466 HesB/YadR/YfhF:Nitrogen-fixing NifU, C-terminal — —
Marinobacter adhaerens HP15 0.52 HP15_1829 tRNA pseudouridine synthase A 0.53 HP15_1791 yhgI protein — —
Pseudomonas stutzeri RCH2 0.52 Psest_2585 pseudouridylate synthase I 0.51 Psest_2104 IscR-regulated protein YhgI low > 67
Acinetobacter radioresistens SK82 0.49 MPMX26_00352 tRNA pseudouridine synthase A 0.45 MPMX26_02345 Fe/S biogenesis protein NfuA — —
Lysobacter sp. OAE881 0.46 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.43 ABIE51_RS11785 NfuA family Fe-S biogenesis protein — —
Xanthomonas campestris pv. campestris strain 8004 0.45 Xcc-8004.1961.1 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.44 Xcc-8004.2620.1 NfuA Fe-S protein maturation 0.28 60
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS01700 tRNA pseudouridine(38-40) synthase TruA 0.45 LRK54_RS17905 NfuA family Fe-S biogenesis protein low > 59
Rhodanobacter denitrificans MT42 0.44 LRK55_RS01480 tRNA pseudouridine(38-40) synthase TruA 0.45 LRK55_RS17760 NfuA family Fe-S biogenesis protein low > 63
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS08015 tRNA pseudouridine(38-40) synthase TruA 0.46 ABZR86_RS02740 NfuA family Fe-S biogenesis protein low > 74
Rhodanobacter sp. FW510-T8 0.42 OKGIIK_04830 truA tRNA pseudouridine(38-40) synthase TruA 0.45 OKGIIK_07395 NfuA family Fe-S biogenesis protein — —

Not shown: 50 genomes with orthologs for GFF1934 only; 1 genomes with orthologs for GFF603 only