Conservation of cofitness between GFF5354 and GFF4456 in Variovorax sp. SCN45

43 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF5354 C4-dicarboxylate transport protein 1.0 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.52 8
Variovorax sp. OAS795 0.90 ABID97_RS23115 dicarboxylate/amino acid:cation symporter 0.78 ABID97_RS06300 shikimate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.80 QEN71_RS11565 dicarboxylate/amino acid:cation symporter 0.42 QEN71_RS27130 shikimate dehydrogenase low > 153
Pseudomonas fluorescens FW300-N1B4 0.78 Pf1N1B4_4962 C4-dicarboxylate transport protein 0.42 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) 0.22 81
Herbaspirillum seropedicae SmR1 0.73 HSERO_RS19090 C4-dicarboxylate ABC transporter 0.46 HSERO_RS01990 shikimate 5-dehydrogenase low > 78
Cupriavidus basilensis FW507-4G11 0.68 RR42_RS26040 C4-dicarboxylate ABC transporter 0.38 RR42_RS17645 shikimate dehydrogenase low > 128
Dechlorosoma suillum PS 0.55 Dsui_3482 Na+/H+ dicarboxylate symporter 0.40 Dsui_0443 shikimate 5-dehydrogenase — —
Pedobacter sp. GW460-11-11-14-LB5 0.54 CA265_RS10595 dicarboxylate/amino acid:cation symporter 0.13 CA265_RS19745 shikimate dehydrogenase (EC 1.1.1.25) (from data) — —
Ralstonia solanacearum PSI07 0.54 RPSI07_RS14855 dicarboxylate/amino acid:cation symporter 0.43 RPSI07_RS11300 shikimate dehydrogenase low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS09840 dicarboxylate/amino acid:cation symporter 0.46 RS_RS13890 shikimate dehydrogenase low > 80
Ralstonia solanacearum UW163 0.54 UW163_RS11255 dicarboxylate/amino acid:cation symporter 0.44 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS02470 dicarboxylate/amino acid:cation symporter 0.44 RALBFv3_RS05945 shikimate dehydrogenase low > 76
Pectobacterium carotovorum WPP14 0.53 HER17_RS14220 dicarboxylate/amino acid:cation symporter 0.33 HER17_RS02250 shikimate dehydrogenase low > 75
Caulobacter crescentus NA1000 Δfur 0.53 CCNA_00264 C4-dicarboxylate transport protein 0.19 CCNA_00003 shikimate 5-dehydrogenase low > 67
Caulobacter crescentus NA1000 0.53 CCNA_00264 C4-dicarboxylate transport protein 0.19 CCNA_00003 shikimate dehydrogenase (EC 1.1.1.25) (from data) low > 66
Mucilaginibacter yixingensis YX-36 DSM 26809 0.52 ABZR88_RS07700 dicarboxylate/amino acid:cation symporter 0.11 ABZR88_RS20055 shikimate dehydrogenase — —
Klebsiella michiganensis M5al 0.52 BWI76_RS08460 dicarboxylate/amino acid:cation symporter 0.33 BWI76_RS25645 shikimate dehydrogenase low > 92
Dickeya dadantii 3937 0.50 DDA3937_RS07395 dicarboxylate/amino acid:cation symporter 0.32 DDA3937_RS19100 shikimate dehydrogenase — —
Dickeya dianthicola ME23 0.50 DZA65_RS07770 dicarboxylate/amino acid:cation symporter 0.31 DZA65_RS20315 shikimate dehydrogenase — —
Dickeya dianthicola 67-19 0.50 HGI48_RS07260 dicarboxylate/amino acid:cation symporter 0.31 HGI48_RS19190 shikimate dehydrogenase — —
Escherichia coli ECRC100 0.50 OKFHMN_06890 gltP dicarboxylate/amino acid:cation symporter 0.37 OKFHMN_17565 aroE shikimate dehydrogenase low > 80
Escherichia coli ECRC99 0.50 KEDOAH_21075 gltP dicarboxylate/amino acid:cation symporter 0.37 KEDOAH_10585 aroE shikimate dehydrogenase — —
Escherichia coli ECRC98 0.50 JDDGAC_10545 gltP dicarboxylate/amino acid:cation symporter 0.37 JDDGAC_21185 aroE shikimate dehydrogenase low > 86
Escherichia coli ECRC102 0.50 NIAGMN_04940 gltP dicarboxylate/amino acid:cation symporter 0.37 NIAGMN_15325 aroE shikimate dehydrogenase — —
Escherichia coli ECRC101 0.50 MCAODC_26110 gltP dicarboxylate/amino acid:cation symporter 0.37 MCAODC_08085 aroE shikimate dehydrogenase low > 87
Escherichia coli ECOR38 0.50 HEPCGN_01380 gltP dicarboxylate/amino acid:cation symporter 0.36 HEPCGN_16385 aroE shikimate dehydrogenase low > 87
Enterobacter sp. TBS_079 0.49 MPMX20_02796 C4-dicarboxylate transport protein 0.33 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Ralstonia sp. UNC404CL21Col 0.49 ABZR87_RS14385 dicarboxylate/amino acid:cation symporter 0.42 ABZR87_RS01605 shikimate dehydrogenase low > 80
Enterobacter asburiae PDN3 0.48 EX28DRAFT_0664 Na+/H+-dicarboxylate symporters 0.33 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Pseudomonas fluorescens FW300-N2E2 0.48 Pf6N2E2_2249 Proton/glutamate symport protein @ Sodium/glutamate symport protein 0.42 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Pseudomonas fluorescens FW300-N2C3 0.47 AO356_01905 L-aspartate transporter (from data) 0.43 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas simiae WCS417 0.46 PS417_19045 amino acid:proton symporter 0.42 PS417_00125 shikimate dehydrogenase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS33330 C4-dicarboxylate ABC transporter 0.41 BPHYT_RS16975 shikimate 5-dehydrogenase low > 109
Shewanella sp. ANA-3 0.26 Shewana3_1726 sodium:dicarboxylate symporter (RefSeq) 0.40 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) 0.66 49
Shewanella oneidensis MR-1 0.26 SO1948 sodium:dicarboxylate symporter family protein (NCBI ptt file) 0.37 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) low > 76
Shewanella loihica PV-4 0.25 Shew_2227 sodium:dicarboxylate symporter (RefSeq) 0.35 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60
Pseudomonas stutzeri RCH2 0.22 Psest_1386 Na+/H+-dicarboxylate symporters 0.39 Psest_0029 shikimate 5-dehydrogenase — —
Lysobacter sp. OAE881 0.22 ABIE51_RS17125 dicarboxylate/amino acid:cation symporter 0.27 ABIE51_RS01815 shikimate dehydrogenase low > 62
Kangiella aquimarina DSM 16071 0.21 B158DRAFT_2215 Na+/H+-dicarboxylate symporters 0.25 B158DRAFT_0259 shikimate 5-dehydrogenase low > 40
Alteromonas macleodii MIT1002 0.21 MIT1002_01702 Glutamate-aspartate carrier protein 0.29 MIT1002_00029 Shikimate dehydrogenase — —
Marinobacter adhaerens HP15 0.20 HP15_2676 proton/sodium-glutamate symport protein 0.39 HP15_3750 shikimate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.17 OKGIIK_06560 gltP dicarboxylate/amino acid:cation symporter 0.24 OKGIIK_15365 aroE shikimate dehydrogenase low > 52
Rhodanobacter denitrificans MT42 0.16 LRK55_RS00475 dicarboxylate/amino acid:cation symporter 0.24 LRK55_RS08360 shikimate dehydrogenase low > 63
Rhodanobacter denitrificans FW104-10B01 0.16 LRK54_RS00700 dicarboxylate/amino acid:cation symporter 0.24 LRK54_RS08595 shikimate dehydrogenase low > 59

Not shown: 4 genomes with orthologs for GFF5354 only; 46 genomes with orthologs for GFF4456 only