| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF4333 | | Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) | 1.0 | GFF4335 | | ABC transporter, periplasmic substrate-binding protein | 0.60 | 9 |
| Acidovorax sp. GW101-3H11 | 0.88 | Ac3H11_2914 | | Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) | 0.49 | Ac3H11_2911 | | ABC transporter, periplasmic substrate-binding protein | — | — |
| Variovorax sp. SCN45 | 0.87 | GFF232 | | Arginine decarboxylase (EC 4.1.1.19); Ornithine decarboxylase (EC 4.1.1.17); Lysine decarboxylase (EC 4.1.1.18) | 0.72 | GFF229 | | ABC transporter, substrate-binding protein (cluster 5, nickel/peptides/opines) | low | > 127 |
| Variovorax sp. OAS795 | 0.86 | ABID97_RS16535 | | arginine/lysine/ornithine decarboxylase | 0.50 | ABID97_RS16520 | | extracellular solute-binding protein | low | > 91 |
| Herbaspirillum seropedicae SmR1 | 0.78 | HSERO_RS17280 | | lysine decarboxylase | 0.44 | HSERO_RS17145 | | peptide ABC transporter substrate-binding protein | — | — |
| Ralstonia solanacearum GMI1000 | 0.74 | RS_RS11875 | | lysine decarboxylase | 0.46 | RS_RS05850 | | ABC transporter substrate-binding protein | — | — |
| Ralstonia solanacearum PSI07 | 0.74 | RPSI07_RS13045 | | lysine decarboxylase | 0.46 | RPSI07_RS18340 | | ABC transporter substrate-binding protein | — | — |
| Ralstonia solanacearum UW163 | 0.74 | UW163_RS09345 | | lysine decarboxylase | 0.46 | UW163_RS12505 | | ABC transporter substrate-binding protein | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.74 | RALBFv3_RS04325 | | lysine decarboxylase | 0.46 | RALBFv3_RS15035 | | ABC transporter substrate-binding protein | — | — |
| Ralstonia sp. UNC404CL21Col | 0.74 | ABZR87_RS16180 | | arginine/lysine/ornithine decarboxylase | 0.45 | ABZR87_RS10680 | | extracellular solute-binding protein | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.74 | RR42_RS15940 | | lysine decarboxylase | 0.46 | RR42_RS13385 | | peptide ABC transporter substrate-binding protein | — | — |
| Paraburkholderia graminis OAS925 | 0.73 | ABIE53_001270 | | arginine decarboxylase | 0.48 | ABIE53_002550 | | microcin C transport system substrate-binding protein | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.73 | H281DRAFT_00160 | | ornithine decarboxylase | 0.48 | H281DRAFT_00560 | | microcin C transport system substrate-binding protein | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.73 | QEN71_RS25000 | | arginine/lysine/ornithine decarboxylase | 0.47 | QEN71_RS06170 | | extracellular solute-binding protein | — | — |
| Burkholderia phytofirmans PsJN | 0.72 | BPHYT_RS04980 | | lysine decarboxylase | 0.48 | BPHYT_RS12385 | | peptide ABC transporter substrate-binding protein | — | — |
| Rhizobium sp. OAE497 | 0.46 | ABIE40_RS23760 | | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | 0.26 | ABIE40_RS09320 | | extracellular solute-binding protein | low | > 107 |
| Sinorhizobium meliloti 1021 | 0.46 | SMa0682 | | decarboxylase (lysine, ornithine, arginine) | 0.27 | SMc02832 | | periplasmic binding protein | low | > 103 |
| Pseudomonas fluorescens FW300-N1B4 | 0.45 | Pf1N1B4_4600 | | Lysine decarboxylase, inducible (EC 4.1.1.18) | 0.34 | Pf1N1B4_4594 | | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) | low | > 87 |
| Pseudomonas sp. S08-1 | 0.45 | OH686_03560 | | Lysine decarboxylase, inducible | 0.34 | OH686_03595 | | ABC transporter periplasmic substrate-binding protein | low | > 80 |
| Pseudomonas fluorescens FW300-N2E3 | 0.45 | AO353_23560 | | lysine decarboxylase | 0.35 | AO353_23480 | | ABC transporter substrate-binding protein | low | > 101 |
| Pseudomonas simiae WCS417 | 0.45 | PS417_12240 | | lysine decarboxylase | 0.34 | PS417_12210 | | ABC transporter substrate-binding protein | low | > 88 |
| Pseudomonas fluorescens GW456-L13 | 0.45 | PfGW456L13_3336 | | Lysine decarboxylase, inducible (EC 4.1.1.18) | 0.34 | PfGW456L13_3342 | | Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1) | 0.32 | 39 |
| Pseudomonas fluorescens SBW25-INTG | 0.45 | PFLU_RS12930 | | lysine decarboxylase | 0.34 | PFLU_RS12900 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.45 | PFLU_RS12930 | | lysine decarboxylase | 0.34 | PFLU_RS12900 | | ABC transporter substrate-binding protein | low | > 109 |
| Pseudomonas stutzeri RCH2 | 0.44 | Psest_2075 | | Arginine/lysine/ornithine decarboxylases | 0.34 | Psest_2068 | | ABC-type oligopeptide transport system, periplasmic component | low | > 67 |
| Pseudomonas putida KT2440 | 0.42 | PP_4140 | | lysine decarboxylase | 0.34 | PP_4147 | | microcin C transporter - periplasmic binding protein | low | > 96 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.33 | GFF1473 | | Arginine decarboxylase, catabolic (EC 4.1.1.19) | 0.26 | GFF3759 | | ABC transporter, periplasmic substrate-binding protein | low | > 78 |
| Escherichia coli ECRC101 | 0.32 | MCAODC_03060 | adiA | arginine decarboxylase | 0.28 | MCAODC_14440 | yejA | Uncharacterized protein YejA | — | — |
| Escherichia fergusonii Becca | 0.32 | EFB2_04465 | | Biodegradative arginine decarboxylase | 0.28 | EFB2_01679 | | hypothetical protein | low | > 86 |
| Escherichia coli BW25113 | 0.32 | b4117 | adiA | biodegradative arginine decarboxylase (RefSeq) | 0.28 | b2177 | yejA | orf, hypothetical protein (VIMSS) | low | > 76 |
| Escherichia coli ECRC101 | 0.32 | OKFHMN_12550 | adiA | arginine decarboxylase | 0.28 | OKFHMN_23390 | yejA | Uncharacterized protein YejA | — | — |
| Escherichia coli ECOR38 | 0.32 | HEPCGN_11185 | adiA | arginine decarboxylase | 0.28 | HEPCGN_22655 | yejA | Uncharacterized protein YejA | low | > 85 |
| Escherichia coli ECRC102 | 0.32 | NIAGMN_10395 | adiA | arginine decarboxylase | 0.28 | NIAGMN_21155 | yejA | Uncharacterized protein YejA | — | — |
| Escherichia coli ECRC99 | 0.32 | KEDOAH_15615 | adiA | arginine decarboxylase | 0.28 | KEDOAH_04795 | yejA | Uncharacterized protein YejA | — | — |
| Escherichia coli ECRC98 | 0.32 | JDDGAC_16185 | adiA | arginine decarboxylase | 0.28 | JDDGAC_27350 | yejA | Uncharacterized protein YejA | — | — |
| Escherichia coli ECRC62 | 0.32 | BNILDI_06675 | adiA | arginine decarboxylase | 0.28 | BNILDI_13885 | yejA | Uncharacterized protein YejA | — | — |
| Escherichia coli ECOR27 | 0.32 | NOLOHH_04815 | adiA | arginine decarboxylase | 0.28 | NOLOHH_14965 | yejA | Uncharacterized protein YejA | low | > 57 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.32 | OHPLBJKB_03927 | | Biodegradative arginine decarboxylase | 0.28 | OHPLBJKB_01532 | | hypothetical protein | low | > 73 |
| Escherichia coli BL21 | 0.32 | ECD_04002 | | lysine decarboxylase, acid-inducible | 0.28 | ECD_02107 | | microcin C ABC transporter periplasmic binding protein | low | > 60 |
| Rahnella sp. WP5 | 0.32 | EX31_RS12950 | | lysine decarboxylase LdcC | 0.26 | EX31_RS19130 | | ABC transporter substrate-binding protein | low | > 89 |
| Escherichia coli Nissle 1917 | 0.32 | ECOLIN_RS23825 | | arginine decarboxylase | 0.28 | ECOLIN_RS12730 | | extracellular solute-binding protein | low | > 52 |
| Vibrio cholerae E7946 ATCC 55056 | 0.32 | CSW01_01445 | | lysine decarboxylase | 0.29 | CSW01_17185 | | ABC transporter substrate-binding protein | low | > 62 |
| Serratia liquefaciens MT49 | 0.32 | IAI46_20175 | | lysine decarboxylase LdcC | 0.26 | IAI46_17315 | | ABC transporter substrate-binding protein | low | > 86 |
| Klebsiella michiganensis M5al | 0.32 | BWI76_RS05300 | | lysine decarboxylase LdcC | 0.26 | BWI76_RS19780 | | antibiotic ABC transporter substrate-binding protein | low | > 92 |
| Pantoea sp. MT58 | 0.32 | IAI47_15445 | | lysine decarboxylase LdcC | 0.24 | IAI47_06615 | | ABC transporter substrate-binding protein | low | > 76 |
| Enterobacter asburiae PDN3 | 0.31 | EX28DRAFT_3774 | | Arginine/lysine/ornithine decarboxylases | 0.27 | EX28DRAFT_0384 | | ABC-type oligopeptide transport system, periplasmic component | low | > 76 |
| Enterobacter sp. TBS_079 | 0.31 | MPMX20_00870 | | Constitutive lysine decarboxylase | 0.27 | MPMX20_03143 | | hypothetical protein | low | > 85 |
| Rhodopseudomonas palustris CGA009 | 0.29 | TX73_010575 | | Orn/Lys/Arg decarboxylase N-terminal domain-containing protein | 0.30 | TX73_019130 | | extracellular solute-binding protein | low | > 86 |
| Magnetospirillum magneticum AMB-1 | 0.29 | AMB_RS05630 | | amino acid decarboxylase | 0.34 | AMB_RS22200 | | ABC transporter substrate-binding protein | — | — |
| Azospirillum sp. SherDot2 | 0.29 | MPMX19_05197 | | Inducible ornithine decarboxylase | 0.33 | MPMX19_02168 | | hypothetical protein | low | > 112 |
| Azospirillum brasilense Sp245 | 0.29 | AZOBR_RS27535 | | amino acid decarboxylase | 0.33 | AZOBR_RS03825 | | hypothetical protein | low | > 97 |
| Dickeya dianthicola ME23 | 0.21 | DZA65_RS05225 | | ornithine decarboxylase | 0.25 | DZA65_RS09535 | | ABC transporter substrate-binding protein | low | > 75 |
| Dickeya dadantii 3937 | 0.20 | DDA3937_RS04870 | | ornithine decarboxylase | 0.25 | DDA3937_RS09190 | | ABC transporter substrate-binding protein | low | > 74 |
| Dickeya dianthicola 67-19 | 0.20 | HGI48_RS04890 | | ornithine decarboxylase | 0.24 | HGI48_RS09230 | | ABC transporter substrate-binding protein | low | > 71 |
| Pectobacterium carotovorum WPP14 | 0.20 | HER17_RS16680 | | ornithine decarboxylase | 0.27 | HER17_RS12920 | | extracellular solute-binding protein | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.20 | LU632_RS05390 | | ornithine decarboxylase | 0.26 | LU632_RS17565 | | extracellular solute-binding protein | low | > 74 |
Not shown: 7 genomes with orthologs for GFF4333 only; 13 genomes with orthologs for GFF4335 only