Conservation of cofitness between PS417_04290 and PS417_20930 in Pseudomonas simiae WCS417

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_04290 hypothetical protein 1.0 PS417_20930 50S rRNA methyltransferase 0.45 3
Pseudomonas fluorescens SBW25 0.96 PFLU_RS04345 ribosome-associated protein 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS04345 ribosome-associated protein 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.21 45
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1091 FIG138315: Putative alpha helix protein 0.92 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5025 FIG138315: Putative alpha helix protein 0.93 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.90 AO356_07090 hypothetical protein 0.93 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_3279 FIG138315: Putative alpha helix protein 0.93 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_05210 hypothetical protein 0.93 AO353_00775 50S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_4155 Protein of unknown function DUF615 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_4155 Protein of unknown function DUF615 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas sp. RS175 0.89 PFR28_00162 hypothetical protein 0.92 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L low > 88
Pseudomonas sp. S08-1 0.80 OH686_08575 UPF0307 protein YjgA 0.80 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Pseudomonas putida KT2440 0.77 PP_0941 putative ribosome associated protein 0.81 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase 0.42 18
Pseudomonas stutzeri RCH2 0.74 Psest_3319 Uncharacterized protein conserved in bacteria 0.80 Psest_1949 Predicted N6-adenine-specific DNA methylase low > 67
Kangiella aquimarina DSM 16071 0.36 B158DRAFT_2073 Uncharacterized protein conserved in bacteria 0.38 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Pectobacterium carotovorum WPP14 0.36 HER17_RS20095 ribosome-associated protein 0.38 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Marinobacter adhaerens HP15 0.35 HP15_2448 protein belonging to uncharacterized protein family UPF0307 0.45 HP15_1379 RNA methylase low > 73
Serratia liquefaciens MT49 0.34 IAI46_22590 ribosome-associated protein 0.37 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Dickeya dadantii 3937 0.34 DDA3937_RS01495 ribosome-associated protein 0.38 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Enterobacter sp. TBS_079 0.34 MPMX20_00516 hypothetical protein 0.38 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L — —
Enterobacter asburiae PDN3 0.34 EX28DRAFT_3421 Uncharacterized protein conserved in bacteria 0.38 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase — —
Xanthomonas campestris pv. campestris strain 8004 0.32 Xcc-8004.1884.1 FIG138315: Putative alpha helix protein 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pantoea sp. MT58 0.32 IAI47_02760 ribosome-associated protein 0.37 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Dickeya dianthicola ME23 0.32 DZA65_RS01475 ribosome-associated protein 0.38 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Dickeya dianthicola 67-19 0.32 HGI48_RS01410 ribosome-associated protein 0.38 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Erwinia tracheiphila SCR3 0.32 LU632_RS02140 ribosome-associated protein 0.38 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Klebsiella michiganensis M5al 0.32 BWI76_RS02845 hypothetical protein 0.38 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase — —
Escherichia coli ECRC101 0.32 OKFHMN_11930 yjgA ribosome-associated protein 0.38 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC98 0.32 JDDGAC_15570 yjgA ribosome-associated protein 0.38 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia fergusonii Becca 0.32 EFB2_04299 hypothetical protein 0.38 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli BL21 0.32 ECD_04102 ribosome-associated UPF0307 family protein 0.38 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 60
Escherichia coli ECRC102 0.32 NIAGMN_09780 yjgA ribosome-associated protein 0.38 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC99 0.32 KEDOAH_16225 yjgA ribosome-associated protein 0.38 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli BW25113 0.32 b4234 yjgA hypothetical protein (NCBI) 0.38 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia coli ECOR38 0.32 HEPCGN_10130 yjgA ribosome-associated protein 0.38 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 85
Escherichia coli ECRC62 0.32 BNILDI_07320 yjgA ribosome-associated protein 0.38 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS24565 ribosome biogenesis factor YjgA 0.38 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_03801 hypothetical protein 0.38 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 73
Escherichia coli ECRC101 0.32 MCAODC_02435 yjgA ribosome-associated protein 0.38 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECOR27 0.32 NOLOHH_04190 yjgA ribosome-associated protein 0.38 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 57
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.32 GFF903 FIG138315: Putative alpha helix protein 0.38 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Rahnella sp. WP5 0.31 EX31_RS12315 ribosome-associated protein 0.37 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Lysobacter sp. OAE881 0.30 ABIE51_RS06800 ribosome biogenesis factor YjgA 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Dyella japonica UNC79MFTsu3.2 0.29 ABZR86_RS21710 ribosome biogenesis factor YjgA 0.43 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Rhodanobacter sp. FW510-T8 0.28 OKGIIK_10270 DUF615 domain-containing protein 0.39 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 52
Rhodanobacter denitrificans FW104-10B01 0.27 LRK54_RS03385 DUF615 domain-containing protein 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella amazonensis SB2B 0.27 Sama_0481 hypothetical protein (RefSeq) 0.38 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Rhodanobacter denitrificans MT42 0.27 LRK55_RS03135 ribosome biogenesis factor YjgA 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella oneidensis MR-1 0.26 SO4079 conserved hypothetical protein (NCBI ptt file) 0.37 SO1851 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.25 Shewana3_3632 hypothetical protein (RefSeq) 0.37 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Alteromonas macleodii MIT1002 0.24 MIT1002_00229 x96 protein 0.35 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70
Acinetobacter radioresistens SK82 0.21 MPMX26_00549 hypothetical protein 0.37 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L low > 36
Shewanella loihica PV-4 0.20 Shew_0415 hypothetical protein (RefSeq) 0.38 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60

Not shown: 5 genomes with orthologs for PS417_04290 only; 1 genomes with orthologs for PS417_20930 only