Conservation of cofitness between PS417_03560 and PS417_20930 in Pseudomonas simiae WCS417

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_03560 GTP-binding protein 1.0 PS417_20930 50S rRNA methyltransferase 0.34 7
Pseudomonas fluorescens SBW25 0.98 PFLU_RS03610 redox-regulated ATPase YchF 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS03610 redox-regulated ATPase YchF 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens GW456-L13 0.97 PfGW456L13_1574 GTP-binding and nucleic acid-binding protein YchF 0.93 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N1B4 0.97 Pf1N1B4_2912 GTP-binding and nucleic acid-binding protein YchF 0.92 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas fluorescens FW300-N2C3 0.97 AO356_16450 GTP-binding protein 0.93 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas fluorescens FW300-N2E3 0.97 AO353_14740 GTP-binding protein 0.93 AO353_00775 50S rRNA methyltransferase low > 101
Pseudomonas syringae pv. syringae B728a 0.96 Psyr_0941 Conserved hypothetical protein 92 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.96 Psyr_0941 Conserved hypothetical protein 92 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas sp. RS175 0.96 PFR28_03664 Ribosome-binding ATPase YchF 0.92 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L low > 88
Pseudomonas putida KT2440 0.93 PP_0719 ribosome-associated potassium-dependent informational ATP/GTPase 0.81 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase low > 96
Pseudomonas sp. S08-1 0.92 OH686_07965 GTP-binding and nucleic acid-binding protein YchF 0.80 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Pseudomonas stutzeri RCH2 0.90 Psest_1103 GTP-binding protein YchF 0.80 Psest_1949 Predicted N6-adenine-specific DNA methylase low > 67
Acinetobacter radioresistens SK82 0.76 MPMX26_01861 Ribosome-binding ATPase YchF 0.37 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L low > 36
Marinobacter adhaerens HP15 0.75 HP15_704 translation-associated GTPase 0.45 HP15_1379 RNA methylase low > 73
Shewanella sp. ANA-3 0.72 Shewana3_1012 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.37 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.72 SO1185 conserved hypothetical protein TIGR00092 (NCBI ptt file) 0.37 SO1851 conserved hypothetical protein (NCBI ptt file) 0.38 33
Escherichia coli ECRC62 0.72 BNILDI_18805 ychF redox-regulated ATPase YchF 0.38 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Shewanella amazonensis SB2B 0.71 Sama_2571 GTP-dependent nucleic acid-binding protein EngD (RefSeq) 0.38 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 62
Escherichia coli ECRC98 0.71 JDDGAC_06165 ychF redox-regulated ATPase YchF 0.38 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli BW25113 0.71 b1203 ychF translation-associated GTPase (NCBI) 0.38 b0948 ycbY predicted methyltransferase (NCBI) — —
Escherichia coli ECOR27 0.71 NOLOHH_20650 ychF redox-regulated ATPase YchF 0.38 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.71 OKFHMN_28410 ychF redox-regulated ATPase YchF 0.38 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.71 OHPLBJKB_02484 Ribosome-binding ATPase YchF 0.38 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 73
Escherichia coli ECRC101 0.71 MCAODC_21850 ychF redox-regulated ATPase YchF 0.38 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli Nissle 1917 0.71 ECOLIN_RS07280 redox-regulated ATPase YchF 0.38 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC102 0.71 NIAGMN_27825 ychF redox-regulated ATPase YchF 0.38 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia fergusonii Becca 0.71 EFB2_02724 Ribosome-binding ATPase YchF 0.38 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli ECOR38 0.71 HEPCGN_24875 ychF redox-regulated ATPase YchF 0.38 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC99 0.71 KEDOAH_25405 ychF redox-regulated ATPase YchF 0.38 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli BL21 0.71 ECD_01178 catalase inhibitor protein; ATPase, K+-dependent, ribosome-associated 0.38 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent — —
Erwinia tracheiphila SCR3 0.71 LU632_RS13950 ychF redox-regulated ATPase YchF 0.38 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Dickeya dianthicola 67-19 0.71 HGI48_RS10975 redox-regulated ATPase YchF 0.38 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Dickeya dadantii 3937 0.71 DDA3937_RS11035 redox-regulated ATPase YchF 0.38 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.46 72
Dickeya dianthicola ME23 0.71 DZA65_RS11435 redox-regulated ATPase YchF 0.38 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.71 GFF2784 GTP-binding and nucleic acid-binding protein YchF 0.38 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Pantoea sp. MT58 0.71 IAI47_11310 redox-regulated ATPase YchF 0.37 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_2052 GTP-binding protein YchF 0.38 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Pectobacterium carotovorum WPP14 0.70 HER17_RS10445 redox-regulated ATPase YchF 0.38 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Lysobacter sp. OAE881 0.69 ABIE51_RS05745 redox-regulated ATPase YchF 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Klebsiella michiganensis M5al 0.69 BWI76_RS17485 GTP-binding protein YchF 0.38 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase — —
Alteromonas macleodii MIT1002 0.69 MIT1002_01504 Ribosome-binding ATPase YchF 0.35 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70
Enterobacter sp. TBS_079 0.69 MPMX20_02645 Ribosome-binding ATPase YchF 0.38 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Vibrio cholerae E7946 ATCC 55056 0.69 CSW01_10875 redox-regulated ATPase YchF 0.39 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L low > 62
Rahnella sp. WP5 0.69 EX31_RS07380 redox-regulated ATPase YchF 0.37 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Shewanella loihica PV-4 0.69 Shew_2919 translation-associated GTPase (RefSeq) 0.38 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60
Dyella japonica UNC79MFTsu3.2 0.69 ABZR86_RS22010 redox-regulated ATPase YchF 0.43 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Enterobacter asburiae PDN3 0.69 EX28DRAFT_0821 GTP-binding protein YchF 0.38 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase — —
Serratia liquefaciens MT49 0.68 IAI46_10240 redox-regulated ATPase YchF 0.37 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Xanthomonas campestris pv. campestris strain 8004 0.68 Xcc-8004.4168.1 GTP-binding and nucleic acid-binding protein YchF 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 74
Rhodanobacter sp. FW510-T8 0.67 OKGIIK_10565 Ribosome-binding ATPase YchF 0.39 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 52
Rhodanobacter denitrificans FW104-10B01 0.66 LRK54_RS03675 redox-regulated ATPase YchF 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Rhodanobacter denitrificans MT42 0.66 LRK55_RS03425 redox-regulated ATPase YchF 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 63

Not shown: 48 genomes with orthologs for PS417_03560 only; 1 genomes with orthologs for PS417_20930 only