Conservation of cofitness between PS417_21480 and PS417_20930 in Pseudomonas simiae WCS417

52 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_21480 23S rRNA pseudouridylate synthase 1.0 PS417_20930 50S rRNA methyltransferase 0.45 1
Pseudomonas fluorescens SBW25 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.99 PFLU_RS22545 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 109
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_01405 23S rRNA pseudouridylate synthase 0.93 AO353_00775 50S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.92 Pf1N1B4_3844 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) — —
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.93 Pf6N2E2_2346 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_20125 23S rRNA pseudouridylate synthase 0.93 AO356_02605 50S rRNA methyltransferase low > 104
Pseudomonas sp. RS175 0.92 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.92 PFR28_01055 Ribosomal RNA large subunit methyltransferase K/L low > 88
Pseudomonas fluorescens GW456-L13 0.90 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.93 PfGW456L13_4094 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.88 Psyr_2108 23S rRNA m(2)G-2445 methyltransferase low > 86
Pseudomonas putida KT2440 0.86 PP_1906 ribosomal large subunit pseudouridine synthase C 0.81 PP_2096 fused 23S rRNA m2G2445 methyltransferase and 23S rRNA m7G2069 methyltransferase low > 96
Pseudomonas stutzeri RCH2 0.82 Psest_1680 pseudouridine synthase, RluA family 0.80 Psest_1949 Predicted N6-adenine-specific DNA methylase — —
Pseudomonas sp. S08-1 0.81 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.80 OH686_03110 23S rRNA (guanine(2445)-N(2))-methyltransferase / 23S rRNA (guanine(2069)-N(7))-methyltransferase low > 80
Pantoea sp. MT58 0.56 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 IAI47_12690 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 76
Pectobacterium carotovorum WPP14 0.55 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 HER17_RS11990 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Rahnella sp. WP5 0.55 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 EX31_RS18080 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 89
Erwinia tracheiphila SCR3 0.54 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 LU632_RS09965 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Escherichia coli ECRC62 0.54 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 BNILDI_20000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.54 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.38 OHPLBJKB_02718 Ribosomal RNA large subunit methyltransferase K/L low > 73
Escherichia coli BW25113 0.54 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.38 b0948 ycbY predicted methyltransferase (NCBI) low > 76
Escherichia fergusonii Becca 0.54 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.38 EFB2_03123 Ribosomal RNA large subunit methyltransferase K/L low > 86
Escherichia coli ECOR27 0.54 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 NOLOHH_21835 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 57
Escherichia coli BL21 0.54 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.38 ECD_00952 23S rRNA m(2)G2445 and m(7)G2069 methyltransferases, SAM-dependent low > 60
Escherichia coli ECOR38 0.54 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 HEPCGN_23240 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.94 38
Escherichia coli Nissle 1917 0.54 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 ECOLIN_RS04980 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.38 GFF3239 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 78
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.38 EX28DRAFT_1995 Predicted N6-adenine-specific DNA methylase low > 76
Escherichia coli ECRC101 0.54 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 MCAODC_24670 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC99 0.54 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 KEDOAH_22455 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC98 0.54 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 JDDGAC_08890 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC101 0.54 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 OKFHMN_05280 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Escherichia coli ECRC102 0.54 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 NIAGMN_03000 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL — —
Enterobacter sp. TBS_079 0.54 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.38 MPMX20_01599 Ribosomal RNA large subunit methyltransferase K/L low > 85
Alteromonas macleodii MIT1002 0.54 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.35 MIT1002_02036 Ribosomal RNA large subunit methyltransferase K/L low > 70
Klebsiella michiganensis M5al 0.54 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.38 BWI76_RS09925 23S rRNA (guanine(2445)-N(2))/(guanine(2069)-N(7))- methyltransferase low > 92
Shewanella amazonensis SB2B 0.53 Sama_1988 pseudouridylate synthase (RefSeq) 0.38 Sama_1600 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) 0.38 13
Dickeya dadantii 3937 0.53 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 DDA3937_RS12840 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74
Serratia liquefaciens MT49 0.53 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.37 IAI46_08820 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 86
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 HGI48_RS12910 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 71
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.38 DZA65_RS13375 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 75
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.38 B158DRAFT_2229 23S rRNA m(2)G-2445 methyltransferase (EC 2.1.1.52) low > 40
Shewanella loihica PV-4 0.52 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.38 Shew_1812 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 60
Shewanella sp. ANA-3 0.52 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.37 Shewana3_1601 rlmL 23S rRNA m(2)G2445 methyltransferase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.49 HP15_2221 pseudouridine synthase, RluA family 0.45 HP15_1379 RNA methylase 0.37 15
Vibrio cholerae E7946 ATCC 55056 0.47 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.39 CSW01_07480 ribosomal RNA large subunit methyltransferase K/L low > 62
Lysobacter sp. OAE881 0.43 ABIE51_RS11800 RluA family pseudouridine synthase 0.39 ABIE51_RS14475 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 62
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.40 Xcc-8004.3335.1 23S rRNA (guanine-N-2-) -methyltransferase rlmL EC 2.1.1.-) low > 74
Rhodanobacter denitrificans MT42 0.42 LRK55_RS17750 RluA family pseudouridine synthase 0.40 LRK55_RS14315 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL 0.59 51
Rhodanobacter denitrificans FW104-10B01 0.42 LRK54_RS17895 RluA family pseudouridine synthase 0.40 LRK54_RS14600 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 59
Acinetobacter radioresistens SK82 0.41 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.37 MPMX26_01097 Ribosomal RNA large subunit methyltransferase K/L low > 36
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.39 OKGIIK_03440 rlmKL bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 52
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS02725 RluA family pseudouridine synthase 0.43 ABZR86_RS21235 bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL low > 74

Not shown: 32 genomes with orthologs for PS417_21480 only; 1 genomes with orthologs for PS417_20930 only