Conservation of cofitness between PGA1_c21740 and PGA1_c29410 in Phaeobacter inhibens DSM 17395

32 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c21740 transcriptional regulator, ArgP family 1.0 PGA1_c29410 ammonium transporter 0.23 12
Azospirillum sp. SherDot2 0.55 MPMX19_01759 putative HTH-type transcriptional regulator 0.18 MPMX19_01885 Ammonia channel low > 112
Dinoroseobacter shibae DFL-12 0.53 Dshi_0711 transcriptional regulator, LysR family (RefSeq) 0.63 Dshi_0144 ammonium transporter (RefSeq) low > 64
Rhodospirillum rubrum S1H 0.47 Rru_A0658 Transcriptional Regulator, LysR family (NCBI) 0.29 Rru_A0554 Rh-like protein/ammonium transporter (NCBI) low > 58
Ralstonia sp. UNC404CL21Col 0.43 ABZR87_RS14025 LysR family transcriptional regulator ArgP 0.19 ABZR87_RS06040 ammonium transporter low > 80
Acidovorax sp. GW101-3H11 0.43 Ac3H11_3378 chromosome replication initiation inhibitor protein 0.21 Ac3H11_1462 Ammonium transporter low > 79
Cupriavidus basilensis FW507-4G11 0.43 RR42_RS31465 LysR family transcriptional regulator 0.19 RR42_RS28950 ammonium transporter low > 128
Paraburkholderia sabiae LMG 24235 0.41 QEN71_RS23610 LysR family transcriptional regulator ArgP 0.21 QEN71_RS23255 ammonium transporter low > 153
Paraburkholderia graminis OAS925 0.41 ABIE53_001719 LysR family transcriptional regulator (chromosome initiation inhibitor) 0.20 ABIE53_001796 Amt family ammonium transporter low > 113
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_04882 transcriptional regulator, LysR family 0.20 H281DRAFT_05071 ammonium transporter — —
Burkholderia phytofirmans PsJN 0.40 BPHYT_RS07440 LysR family transcriptional regulator 0.20 BPHYT_RS07910 ammonium transporter — —
Variovorax sp. OAS795 0.39 ABID97_RS23875 LysR family transcriptional regulator ArgP 0.22 ABID97_RS20920 ammonium transporter low > 91
Variovorax sp. SCN45 0.36 GFF2318 Transcriptional regulator ArgP, LysR family 0.21 GFF6676 Ammonium transporter low > 127
Shewanella loihica PV-4 0.34 Shew_1844 chromosome replication initiation inhibitor protein (RefSeq) 0.48 Shew_0847 Rh family protein/ammonium transporter (RefSeq) low > 60
Shewanella amazonensis SB2B 0.34 Sama_2987 chromosome replication initiation inhibitor protein (RefSeq) 0.46 Sama_0651 Rh-like protein/ammonium transporter (RefSeq) low > 62
Pseudomonas stutzeri RCH2 0.34 Psest_1637 transcriptional regulator, ArgP family 0.47 Psest_3771 probable ammonium transporter, marine subtype low > 67
Pseudomonas putida KT2440 0.33 PP_0917 Chromosome initiation inhibitor 0.20 PP_2106 putative Ammonium transporter low > 96
Pseudomonas sp. S08-1 0.32 OH686_07195 Transcriptional regulator ArgP, LysR family 0.44 OH686_13765 Ammonium transporter low > 80
Marinobacter adhaerens HP15 0.32 HP15_868 transcriptional regulator, LysR family 0.44 HP15_274 ammonium/methylammonium permease low > 73
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_03915 LysR family transcriptional regulator 0.21 AO353_19220 ammonium transporter low > 101
Pseudomonas fluorescens GW456-L13 0.32 PfGW456L13_1782 Chromosome initiation inhibitor 0.21 PfGW456L13_2267 Ammonium transporter low > 87
Pseudomonas simiae WCS417 0.32 PS417_22165 LysR family transcriptional regulator 0.23 PS417_08635 ammonium transporter low > 88
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS23790 LysR family transcriptional regulator ArgP 0.22 PFLU_RS08590 ammonium transporter low > 109
Pseudomonas fluorescens SBW25 0.32 PFLU_RS23790 LysR family transcriptional regulator ArgP 0.22 PFLU_RS08590 ammonium transporter low > 109
Shewanella oneidensis MR-1 0.32 SO2866 iciA chromosome initiation inhibitor (NCBI ptt file) 0.47 SO0760 amt ammonium transporter (NCBI ptt file) low > 76
Pseudomonas fluorescens FW300-N2E2 0.31 Pf6N2E2_2849 Chromosome initiation inhibitor 0.21 Pf6N2E2_2430 Ammonium transporter 0.32 82
Pseudomonas fluorescens FW300-N1B4 0.31 Pf1N1B4_708 Chromosome initiation inhibitor 0.21 Pf1N1B4_243 Ammonium transporter low > 87
Pseudomonas sp. RS175 0.31 PFR28_00608 HTH-type transcriptional regulator ArgP 0.20 PFR28_00998 Ammonia channel low > 88
Pseudomonas fluorescens FW300-N2C3 0.30 AO356_04995 LysR family transcriptional regulator 0.20 AO356_03020 ammonium transporter low > 104
Shewanella sp. ANA-3 0.30 Shewana3_1652 chromosome replication initiation inhibitor protein (RefSeq) 0.48 Shewana3_3531 Rh family protein/ammonium transporter (RefSeq) low > 73
Desulfovibrio vulgaris Miyazaki F 0.27 DvMF_2123 chromosome replication initiation inhibitor protein (RefSeq) 0.24 DvMF_3023 ammonium transporter (RefSeq) low > 51
Alteromonas macleodii MIT1002 0.27 MIT1002_00129 OriC replication inhibitor 0.42 MIT1002_00417 Ammonia transporter low > 70
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_02560 chromosome initiation inhibitor 0.41 CSW01_03200 ammonium transporter low > 62

Not shown: 38 genomes with orthologs for PGA1_c21740 only; 12 genomes with orthologs for PGA1_c29410 only