Conservation of cofitness between PGA1_c14770 and PGA1_c28020 in Phaeobacter inhibens DSM 17395

40 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Phaeobacter inhibens DSM 17395 1.0 PGA1_c14770 tRNA-dihydrouridine synthase DusB 1.0 PGA1_c28020 fructokinase Frk 0.46 6
Dinoroseobacter shibae DFL-12 0.58 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) 0.44 Dshi_2797 Fructokinase (EC 2.7.1.4) (from data) low > 64
Agrobacterium fabrum C58 0.49 Atu1444 nitrogen regulation protein 0.38 Atu0401 fructokinase low > 89
Sinorhizobium meliloti 1021 0.48 SMc01041 NIFR3-like protein 0.38 SMc02164 fructokinase low > 103
Rhizobium sp. OAE497 0.47 ABIE40_RS09080 tRNA dihydrouridine synthase DusB 0.38 ABIE40_RS02140 carbohydrate kinase — —
Azospirillum brasilense Sp245 0.44 AZOBR_RS14420 tRNA-dihydrouridine synthase 0.10 AZOBR_RS29860 ketodeoxygluconokinase low > 97
Azospirillum sp. SherDot2 0.42 MPMX19_01110 tRNA-dihydrouridine synthase B 0.17 MPMX19_03654 Fructokinase low > 112
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase 0.15 H281DRAFT_02118 fructokinase low > 103
Ralstonia sp. UNC404CL21Col 0.40 ABZR87_RS07650 tRNA dihydrouridine synthase DusB 0.13 ABZR87_RS18655 carbohydrate kinase low > 80
Ralstonia solanacearum PSI07 0.39 RPSI07_RS21520 tRNA dihydrouridine synthase DusB 0.14 RPSI07_RS04910 carbohydrate kinase low > 81
Ralstonia solanacearum UW163 0.39 UW163_RS01890 tRNA dihydrouridine synthase DusB 0.13 UW163_RS20450 carbohydrate kinase — —
Ralstonia solanacearum GMI1000 0.39 RS_RS02515 tRNA dihydrouridine synthase DusB 0.13 RS_RS23325 carbohydrate kinase low > 80
Ralstonia solanacearum IBSBF1503 0.39 RALBFv3_RS11695 tRNA dihydrouridine synthase DusB 0.13 RALBFv3_RS18680 carbohydrate kinase low > 76
Alteromonas macleodii MIT1002 0.39 MIT1002_03957 putative tRNA-dihydrouridine synthase 0.13 MIT1002_03770 5-dehydro-2-deoxygluconokinase low > 70
Variovorax sp. OAS795 0.39 ABID97_RS24735 tRNA dihydrouridine synthase DusB 0.29 ABID97_RS07145 carbohydrate kinase low > 91
Caulobacter crescentus NA1000 0.39 CCNA_01813 tRNA-dihydrouridine synthase 0.09 CCNA_01110 2-dehydro-3-deoxygluconokinase low > 66
Caulobacter crescentus NA1000 Δfur 0.39 CCNA_01813 tRNA-dihydrouridine synthase 0.09 CCNA_01110 2-dehydro-3-deoxygluconokinase low > 67
Burkholderia phytofirmans PsJN 0.38 BPHYT_RS16585 tRNA-dihydrouridine synthase B 0.14 BPHYT_RS02045 Fructokinase (EC 2.7.1.4) (from data) low > 109
Variovorax sp. SCN45 0.38 GFF2144 tRNA-dihydrouridine synthase DusB 0.27 GFF5279 Fructokinase (EC 2.7.1.4) low > 127
Dyella japonica UNC79MFTsu3.2 0.37 ABZR86_RS11525 tRNA dihydrouridine synthase DusB 0.15 ABZR86_RS11105 Fructokinase (EC 2.7.1.4) (from data) low > 74
Klebsiella michiganensis M5al 0.37 BWI76_RS25565 tRNA dihydrouridine synthase DusB 0.40 BWI76_RS14875 ribokinase-like domain-containing protein — —
Escherichia fergusonii Becca 0.37 EFB2_00564 tRNA-dihydrouridine synthase B 0.10 EFB2_00282 2-dehydro-3-deoxygluconokinase low > 86
Escherichia coli Nissle 1917 0.37 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB 0.10 ECOLIN_RS20170 2-dehydro-3-deoxygluconokinase low > 52
Escherichia coli BL21 0.37 ECD_03118 tRNA-dihydrouridine synthase B 0.09 ECD_03374 2-dehydro-3-deoxygluconokinase low > 60
Escherichia coli BW25113 0.37 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) 0.10 b3526 kdgK ketodeoxygluconokinase (VIMSS) low > 76
Herbaspirillum seropedicae SmR1 0.37 HSERO_RS02050 tRNA-dihydrouridine synthase B 0.16 HSERO_RS02180 fructokinase low > 78
Dickeya dianthicola ME23 0.37 DZA65_RS01355 tRNA dihydrouridine synthase DusB 0.14 DZA65_RS11450 carbohydrate kinase low > 75
Pseudomonas sp. RS175 0.36 PFR28_05216 tRNA-dihydrouridine synthase B 0.27 PFR28_01707 Fructokinase low > 88
Pseudomonas fluorescens FW300-N2C3 0.36 AO356_08215 tRNA-dihydrouridine synthase B 0.30 AO356_27700 fructokinase low > 104
Pseudomonas fluorescens FW300-N2E2 0.36 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.29 Pf6N2E2_804 Fructokinase (EC 2.7.1.4) low > 103
Shewanella amazonensis SB2B 0.36 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) 0.12 Sama_0291 carbohydrate kinase (RefSeq) low > 62
Pseudomonas fluorescens SBW25 0.35 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.29 PFLU_RS13375 carbohydrate kinase low > 109
Pseudomonas fluorescens FW300-N2E3 0.35 AO353_13660 tRNA-dihydrouridine synthase B 0.27 AO353_25910 Fructokinase (EC 2.7.1.4) (from data) low > 101
Pseudomonas fluorescens SBW25-INTG 0.35 PFLU_RS03025 tRNA dihydrouridine synthase DusB 0.29 PFLU_RS13375 carbohydrate kinase low > 109
Pseudomonas simiae WCS417 0.35 PS417_02950 tRNA-dihydrouridine synthase B 0.28 PS417_12685 fructokinase — —
Pseudomonas syringae pv. syringae B728a 0.35 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.28 Psyr_2434 Carbohydrate kinase, PfkB low > 86
Pseudomonas fluorescens FW300-N1B4 0.35 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.27 Pf1N1B4_4844 Fructokinase (EC 2.7.1.4) — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.35 Psyr_4404 tRNA-U20-dihydrouridine synthase 0.28 Psyr_2434 Carbohydrate kinase, PfkB low > 86
Pseudomonas fluorescens GW456-L13 0.35 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.27 PfGW456L13_3036 Fructokinase (EC 2.7.1.4) (from data) low > 87
Acidovorax sp. GW101-3H11 0.34 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) 0.16 Ac3H11_2936 Fructokinase (EC 2.7.1.4) low > 79
Bacteroides stercoris CC31F 0.29 HMPREF1181_RS01530 tRNA dihydrouridine synthase DusB 0.09 HMPREF1181_RS02185 carbohydrate kinase low > 56

Not shown: 45 genomes with orthologs for PGA1_c14770 only; 6 genomes with orthologs for PGA1_c28020 only