Conservation of cofitness between GFF7272 and GFF2057 in Variovorax sp. SCN45

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Variovorax sp. SCN45 1.0 GFF7272 D-glucarate permease 1.0 GFF2057 23S rRNA (adenine(2030)-N(6))-methyltransferase (EC 2.1.1.266) 0.49 19
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3476 D-glucarate permease 0.23 PfGW456L13_219 Protein involved in catabolism of external DNA low > 87
Rahnella sp. WP5 0.54 EX31_RS03160 MFS transporter 0.33 EX31_RS05170 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 89
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.1209.1 D-galactarate permease 0.23 Xcc-8004.1778.1 Protein involved in catabolism of external DNA low > 74
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00942 putative glucarate transporter 0.32 OHPLBJKB_00204 Ribosomal RNA large subunit methyltransferase J low > 73
Escherichia coli ECOR27 0.53 NOLOHH_12100 gudP galactarate/glucarate/glycerate transporter GudP 0.32 NOLOHH_08345 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli ECOR38 0.53 HEPCGN_19475 gudP galactarate/glucarate/glycerate transporter GudP 0.32 HEPCGN_15320 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia fergusonii Becca 0.53 EFB2_01128 putative glucarate transporter 0.33 EFB2_00316 Ribosomal RNA large subunit methyltransferase J low > 86
Escherichia coli BL21 0.53 ECD_02634 putative D-glucarate transporter 0.32 ECD_03348 23S rRNA m(6)A2030 methyltransferase, SAM-dependent low > 61
Escherichia coli BW25113 0.53 b2789 gudP predicted D-glucarate transporter (NCBI) 0.32 b3499 yhiR predicted DNA (exogenous) processing protein (NCBI) low > 76
Escherichia coli ECRC62 0.53 BNILDI_10605 gudP galactarate/glucarate/glycerate transporter GudP 0.32 BNILDI_03215 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 75
Escherichia coli ECRC102 0.53 NIAGMN_17990 gudP galactarate/glucarate/glycerate transporter GudP 0.32 NIAGMN_14175 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC101 0.53 MCAODC_10745 gudP galactarate/glucarate/glycerate transporter GudP 0.32 MCAODC_06925 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 87
Escherichia coli ECRC99 0.53 KEDOAH_07910 gudP galactarate/glucarate/glycerate transporter GudP 0.32 KEDOAH_11735 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase — —
Escherichia coli ECRC98 0.53 JDDGAC_23885 gudP galactarate/glucarate/glycerate transporter GudP 0.32 JDDGAC_20040 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 86
Escherichia coli ECRC100 0.53 OKFHMN_20220 gudP galactarate/glucarate/glycerate transporter GudP 0.32 OKFHMN_16410 rlmJ 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Escherichia coli Nissle 1917 0.53 ECOLIN_RS15540 galactarate/glucarate/glycerate transporter GudP 0.32 ECOLIN_RS19990 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 55
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.53 GFF4843 D-glucarate permease 0.32 GFF515 Protein involved in catabolism of external DNA low > 78
Herbaspirillum seropedicae SmR1 0.53 HSERO_RS15805 glucarate transporter 0.41 HSERO_RS10595 competence protein ComJ low > 78
Klebsiella michiganensis M5al 0.53 BWI76_RS22835 MFS transporter 0.32 BWI76_RS26680 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 92
Pectobacterium carotovorum WPP14 0.53 HER17_RS04075 MFS transporter 0.30 HER17_RS21245 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Pseudomonas putida KT2440 0.53 PP_3600 glucarate transporter 0.24 PP_4945 23S rRNA m(6)A2030 methyltransferase low > 96
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2870 D-galactonate transporter 0.32 EX28DRAFT_4062 Protein involved in catabolism of external DNA low > 76
Enterobacter sp. TBS_079 0.52 MPMX20_03659 putative glucarate transporter 0.32 MPMX20_04398 Ribosomal RNA large subunit methyltransferase J low > 85
Pseudomonas fluorescens SBW25 0.51 PFLU_RS04245 MFS transporter 0.22 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens SBW25-INTG 0.51 PFLU_RS04245 MFS transporter 0.22 PFLU_RS02255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 109
Pseudomonas fluorescens FW300-N2E2 0.51 Pf6N2E2_3297 D-galactarate permease 0.22 Pf6N2E2_3679 Protein involved in catabolism of external DNA low > 103
Pseudomonas fluorescens FW300-N2C3 0.51 AO356_07175 glucarate transporter 0.22 AO356_08990 lactate dehydrogenase low > 104
Erwinia tracheiphila SCR3 0.51 LU632_RS06310 MFS transporter 0.30 LU632_RS19485 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Pseudomonas sp. RS175 0.51 PFR28_00144 putative glucarate transporter 0.22 PFR28_05056 Ribosomal RNA large subunit methyltransferase J low > 88
Pseudomonas fluorescens FW300-N2E3 0.51 AO353_05295 glucarate transporter 0.22 AO353_12840 lactate dehydrogenase low > 101
Pseudomonas simiae WCS417 0.51 PS417_04205 D-galacturonate transporter (MFS superfamily) (from data) 0.22 PS417_02200 lactate dehydrogenase — —
Ralstonia solanacearum PSI07 0.51 RPSI07_RS03475 MFS transporter 0.41 RPSI07_RS08205 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 81
Ralstonia solanacearum UW163 0.51 UW163_RS19435 MFS transporter 0.41 UW163_RS04530 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ — —
Ralstonia solanacearum IBSBF1503 0.51 RALBFv3_RS19740 MFS transporter 0.41 RALBFv3_RS09065 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Pseudomonas syringae pv. syringae B728a ΔmexB 0.50 Psyr_4226 D-galactonate transporter 0.23 Psyr_4772 Protein of unknown function DUF519 low > 86
Pseudomonas syringae pv. syringae B728a 0.50 Psyr_4226 D-galactonate transporter 0.23 Psyr_4772 Protein of unknown function DUF519 low > 86
Burkholderia phytofirmans PsJN 0.50 BPHYT_RS24150 glucarate transporter 0.38 BPHYT_RS06880 competence protein ComJ low > 109
Ralstonia solanacearum GMI1000 0.50 RS_RS21080 MFS transporter 0.41 RS_RS16875 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS20330 MFS transporter 0.40 ABZR87_RS04360 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 80
Paraburkholderia graminis OAS925 0.50 ABIE53_006507 ACS family glucarate transporter-like MFS transporter 0.38 ABIE53_001640 23S rRNA (adenine2030-N6)-methyltransferase low > 113
Paraburkholderia sabiae LMG 24235 0.50 QEN71_RS33565 MFS transporter 0.40 QEN71_RS23895 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 153
Cupriavidus basilensis FW507-4G11 0.50 RR42_RS29085 glucarate transporter 0.39 RR42_RS09005 competence protein ComJ low > 128
Dickeya dadantii 3937 0.50 DDA3937_RS17055 MFS transporter 0.31 DDA3937_RS21255 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 74
Dickeya dianthicola 67-19 0.50 HGI48_RS17110 MFS transporter 0.31 HGI48_RS00055 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 71
Dickeya dianthicola ME23 0.50 DZA65_RS18185 MFS transporter 0.31 DZA65_RS00045 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 75
Pseudomonas fluorescens FW300-N1B4 0.50 Pf1N1B4_1108 D-galactarate permease 0.22 Pf1N1B4_1481 Protein involved in catabolism of external DNA low > 87
Azospirillum sp. SherDot2 0.49 MPMX19_02893 putative glucarate transporter 0.25 MPMX19_01202 Ribosomal RNA large subunit methyltransferase J low > 112
Pantoea sp. MT58 0.49 IAI47_04080 MFS transporter 0.31 IAI47_01340 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 76
Serratia liquefaciens MT49 0.34 IAI46_16925 MFS transporter 0.32 IAI46_24235 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Lysobacter sp. OAE881 0.14 ABIE51_RS03695 MFS transporter 0.27 ABIE51_RS14285 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ 0.31 9
Azospirillum brasilense Sp245 0.13 AZOBR_RS23835 hexuronate transporter ExuT 0.25 AZOBR_RS21900 lactate dehydrogenase low > 97
Rhodopseudomonas palustris CGA009 0.11 TX73_024990 MFS transporter 0.25 TX73_006025 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ low > 86
Pseudomonas sp. S08-1 0.11 OH686_06110 Uncharacterized MFS-type transporter 0.24 OH686_09780 23S rRNA (adenine(2030)-N(6))-methyltransferase low > 80
Acinetobacter radioresistens SK82 0.10 MPMX26_01890 D-galactonate transporter 0.21 MPMX26_02660 Ribosomal RNA large subunit methyltransferase J — —

Not shown: 7 genomes with orthologs for GFF7272 only; 22 genomes with orthologs for GFF2057 only